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This page was generated on 2023-05-31 05:44:35 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
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BUILD results for GSCA on kunpeng1


To the developers/maintainers of the GSCA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSCA.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 875/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSCA 2.31.0  (landing page)
Zhicheng Ji
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/GSCA
git_branch: devel
git_last_commit: 3a5d95d
git_last_commit_date: 2023-04-25 14:30:29 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: GSCA
Version: 2.31.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data GSCA
StartedAt: 2023-05-29 18:25:47 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 18:26:01 -0000 (Mon, 29 May 2023)
EllapsedTime: 14.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data GSCA
###
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* checking for file ‘GSCA/DESCRIPTION’ ... OK
* preparing ‘GSCA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GSCA.Rnw’ using Sweave
Loading required package: shiny
Loading required package: sp
Loading required package: gplots

Attaching package: ‘gplots’

The following object is masked from ‘package:stats’:

    lowess

Loading required package: ggplot2
Loading required package: reshape2
Loading required package: RColorBrewer
Loading required package: rhdf5
Loading required package: Affymoe4302Expr
Warning in readChar(con, 5L, useBytes = TRUE) :
  cannot open compressed file '/geneid.rda', probable reason 'No such file or directory'

Error: processing vignette 'GSCA.Rnw' failed with diagnostics:
 chunk 8 
Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection

--- failed re-building ‘GSCA.Rnw’

SUMMARY: processing the following file failed:
  ‘GSCA.Rnw’

Error: Vignette re-building failed.
Execution halted