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This page was generated on 2023-05-31 05:44:38 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MSnbase on kunpeng1


To the developers/maintainers of the MSnbase package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSnbase.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1289/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSnbase 2.27.0  (landing page)
Laurent Gatto
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/MSnbase
git_branch: devel
git_last_commit: 66d8d8d
git_last_commit_date: 2023-04-25 14:19:06 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: MSnbase
Version: 2.27.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
StartedAt: 2023-05-29 19:55:41 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 19:59:00 -0000 (Mon, 29 May 2023)
EllapsedTime: 199.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
###
##############################################################################
##############################################################################


* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* preparing ‘MSnbase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v01-MSnbase-demo.Rmd’ using rmarkdown

Quitting from lines 1747-1752 [split] (v01-MSnbase-demo.Rmd)
Error: processing vignette 'v01-MSnbase-demo.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'head': error in evaluating the argument 'object' in selecting a method for function 'pData': object 'dunkley2006' not found
--- failed re-building ‘v01-MSnbase-demo.Rmd’

--- re-building ‘v02-MSnbase-io.Rmd’ using rmarkdown

Quitting from lines 21-24 [env] (v02-MSnbase-io.Rmd)
Error: processing vignette 'v02-MSnbase-io.Rmd' failed with diagnostics:
there is no package called 'pRolocdata'
--- failed re-building ‘v02-MSnbase-io.Rmd’

--- re-building ‘v03-MSnbase-centroiding.Rmd’ using rmarkdown
--- finished re-building ‘v03-MSnbase-centroiding.Rmd’

--- re-building ‘v04-benchmarking.Rmd’ using rmarkdown
--- finished re-building ‘v04-benchmarking.Rmd’

--- re-building ‘v05-MSnbase-development.Rmd’ using rmarkdown
--- finished re-building ‘v05-MSnbase-development.Rmd’

SUMMARY: processing the following files failed:
  ‘v01-MSnbase-demo.Rmd’ ‘v02-MSnbase-io.Rmd’

Error: Vignette re-building failed.
Execution halted