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This page was generated on 2023-05-31 05:44:39 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MungeSumstats on kunpeng1


To the developers/maintainers of the MungeSumstats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1322/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MungeSumstats 1.9.6  (landing page)
Alan Murphy
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/MungeSumstats
git_branch: devel
git_last_commit: 3c91c85
git_last_commit_date: 2023-05-05 09:31:26 -0000 (Fri, 05 May 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: MungeSumstats
Version: 1.9.6
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats
StartedAt: 2023-05-29 20:00:23 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 20:01:45 -0000 (Mon, 29 May 2023)
EllapsedTime: 82.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats
###
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* checking for file ‘MungeSumstats/DESCRIPTION’ ... OK
* preparing ‘MungeSumstats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MungeSumstats.Rmd’ using rmarkdown

Quitting from lines 254-264 [unnamed-chunk-2] (MungeSumstats.Rmd)
Error: processing vignette 'MungeSumstats.Rmd' failed with diagnostics:
Install 'SNPlocs.Hsapiens.dbSNP155.GRCh37' to use 'GRCh37' as 'ref_genome' and 155 as dbSNP version
--- failed re-building ‘MungeSumstats.Rmd’

--- re-building ‘OpenGWAS.Rmd’ using rmarkdown
--- finished re-building ‘OpenGWAS.Rmd’

--- re-building ‘docker.Rmd’ using rmarkdown
[WARNING] Could not parse YAML metadata at line 20 column 1: Unexpected '
  '
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'docker.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘docker.Rmd’

SUMMARY: processing the following file failed:
  ‘MungeSumstats.Rmd’

Error: Vignette re-building failed.
Execution halted