| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-31 05:44:42 -0000 (Wed, 31 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4219 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the RedeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1646/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RedeR 2.5.0 (landing page) Mauro Castro
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: RedeR |
| Version: 2.5.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RedeR_2.5.0.tar.gz |
| StartedAt: 2023-05-30 16:36:23 -0000 (Tue, 30 May 2023) |
| EndedAt: 2023-05-30 16:37:16 -0000 (Tue, 30 May 2023) |
| EllapsedTime: 53.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RedeR_2.5.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RedeR.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘2.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 3.3Mb
java 1.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘RedeR.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
| name | user | system | elapsed | |
| RedPort-class | 0.006 | 0.000 | 0.007 | |
| RedPort | 0.002 | 0.000 | 0.002 | |
| RedeR.data | 0.417 | 0.004 | 0.421 | |
| addEdgeBetweenContainers | 0.012 | 0.004 | 0.017 | |
| addEdges | 0.011 | 0.000 | 0.012 | |
| addGraph | 0.011 | 0.000 | 0.011 | |
| addLegend | 0.011 | 0.000 | 0.011 | |
| addNodes | 0.079 | 0.000 | 0.080 | |
| addSeries | 0 | 0 | 0 | |
| addSubgraph | 0.000 | 0.000 | 0.001 | |
| addSubgraph.list | 0 | 0 | 0 | |
| att | 0.040 | 0.002 | 0.041 | |
| calld | 0.002 | 0.000 | 0.002 | |
| cea | 0.015 | 0.000 | 0.016 | |
| deSelectEdges | 0.011 | 0.000 | 0.011 | |
| deSelectGraph | 0.011 | 0.000 | 0.010 | |
| deSelectNodes | 0.010 | 0.000 | 0.011 | |
| deleteEdges | 0.011 | 0.000 | 0.011 | |
| deleteNodes | 0.010 | 0.000 | 0.011 | |
| deleteSelectedEdges | 0.010 | 0.000 | 0.011 | |
| deleteSelectedNodes | 0.011 | 0.000 | 0.011 | |
| duplicateGraph | 0 | 0 | 0 | |
| exitd | 0.000 | 0.003 | 0.003 | |
| getContainerComponets | 0.012 | 0.001 | 0.012 | |
| getEdgeIDs | 0.008 | 0.003 | 0.011 | |
| getEdges | 0.009 | 0.002 | 0.012 | |
| getGraph | 0.012 | 0.000 | 0.012 | |
| getNodeIDs | 0.012 | 0.000 | 0.013 | |
| getNodes | 0.008 | 0.004 | 0.013 | |
| getSourceEdgeIDs | 0.011 | 0.000 | 0.011 | |
| getTargetEdgeIDs | 0.007 | 0.004 | 0.011 | |
| gtoy.rm | 0 | 0 | 0 | |
| isRelaxActive | 0.000 | 0.002 | 0.002 | |
| mergeNodes | 0.004 | 0.008 | 0.011 | |
| mergeOutEdges | 0.008 | 0.003 | 0.012 | |
| nestNodes | 0.011 | 0.000 | 0.011 | |
| nesthc | 1.349 | 0.060 | 1.408 | |
| ping | 0.003 | 0.000 | 0.002 | |
| relax | 0.009 | 0.004 | 0.012 | |
| resetd | 0.002 | 0.000 | 0.002 | |
| selectAllEdges | 0.012 | 0.000 | 0.012 | |
| selectAllNodes | 0.024 | 0.000 | 0.023 | |
| selectEdges | 0.012 | 0.000 | 0.013 | |
| selectGraph | 0.012 | 0.000 | 0.012 | |
| selectNodes | 0.009 | 0.002 | 0.012 | |
| setArrowDirection | 0.012 | 0.000 | 0.012 | |
| subg | 0.042 | 0.000 | 0.042 | |
| updateContainerSize | 0.012 | 0.000 | 0.013 | |
| updateCoordXY | 0.010 | 0.004 | 0.014 | |
| updateGraph | 0.009 | 0.004 | 0.013 | |
| version | 0.002 | 0.000 | 0.002 | |