| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-31 05:44:45 -0000 (Wed, 31 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4219 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the TFHAZ package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFHAZ.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 2058/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFHAZ 1.23.0 (landing page) Gaia Ceddia
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: TFHAZ |
| Version: 1.23.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings TFHAZ_1.23.0.tar.gz |
| StartedAt: 2023-05-30 21:17:29 -0000 (Tue, 30 May 2023) |
| EndedAt: 2023-05-30 21:24:24 -0000 (Tue, 30 May 2023) |
| EllapsedTime: 414.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TFHAZ.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings TFHAZ_1.23.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/TFHAZ.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘TFHAZ/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TFHAZ’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFHAZ’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
dense_zones 9.326 0.196 9.522
accumulation 8.102 0.256 8.357
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘TFHAZ.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
TFHAZ.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL TFHAZ ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘TFHAZ’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFHAZ)
TFHAZ.Rcheck/TFHAZ-Ex.timings
| name | user | system | elapsed | |
| Ishikawa | 0.083 | 0.020 | 0.103 | |
| TF_acc_w_0 | 0.113 | 0.008 | 0.120 | |
| TF_dense_w_0 | 0.181 | 0.008 | 0.189 | |
| TF_dense_w_10 | 0.175 | 0.008 | 0.183 | |
| TF_dense_w_100 | 0.174 | 0.020 | 0.195 | |
| TF_dense_w_1000 | 0.189 | 0.012 | 0.201 | |
| TF_dense_w_10000 | 0.192 | 0.036 | 0.228 | |
| accumulation | 8.102 | 0.256 | 8.357 | |
| base_dense_w_10 | 0.172 | 0.004 | 0.178 | |
| dense_zones | 9.326 | 0.196 | 9.522 | |
| high_accumulation_zones | 1.595 | 0.104 | 1.699 | |
| n_zones_PCA | 0.030 | 0.004 | 0.034 | |
| plot_accumulation | 0 | 0 | 0 | |
| plot_n_zones | 0.011 | 0.000 | 0.011 | |
| reg_dense_w_10 | 0.166 | 0.012 | 0.178 | |
| w_analysis | 0.012 | 0.000 | 0.012 | |