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This page was generated on 2023-05-31 05:44:46 -0000 (Wed, 31 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4219 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the TransView package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TransView.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 2099/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TransView 1.45.0 (landing page) Julius Muller
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: TransView |
| Version: 1.45.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL TransView |
| StartedAt: 2023-05-29 12:28:55 -0000 (Mon, 29 May 2023) |
| EndedAt: 2023-05-29 12:29:17 -0000 (Mon, 29 May 2023) |
| EllapsedTime: 21.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL TransView
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* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘TransView’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0’
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c R_init_TransView.c -o R_init_TransView.o
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c bam_plbuf.c -o bam_plbuf.o
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c bin_density.c -o bin_density.o
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c construct_dc.c -o construct_dc.o
In file included from /home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include/htslib/hts.h:36,
from /home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include/htslib/sam.h:33,
from /home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include/samtools-1.7-compat.h:5,
from parse_sam.h:4,
from construct_dc.c:23:
/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include/htslib/hts_log.h:75:1: warning: ‘Rprintf’ is an unrecognized format function type [-Wformat=]
75 | HTS_FORMAT(HTS_PRINTF_FMT, 3, 4);
| ^~~~~~~~~~
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c parse_sam.c -o parse_sam.o
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c slice_dc.c -o slice_dc.o
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c visuals.c -o visuals.o
gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o TransView.so R_init_TransView.o bam_plbuf.o bin_density.o construct_dc.o parse_sam.o slice_dc.o visuals.o /home/biocbuild/R/R-4.3.0/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-TransView/00new/TransView/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TransView)