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This page was generated on 2023-05-31 05:44:30 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
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CHECK results for biodbChebi on kunpeng1


To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 191/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.7.0  (landing page)
Pierrick Roger
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: 8404aa9
git_last_commit_date: 2023-04-25 15:32:59 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: biodbChebi
Version: 1.7.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings biodbChebi_1.7.0.tar.gz
StartedAt: 2023-05-30 01:50:03 -0000 (Tue, 30 May 2023)
EndedAt: 2023-05-30 01:51:59 -0000 (Tue, 30 May 2023)
EllapsedTime: 116.2 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings biodbChebi_1.7.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/biodbChebi.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘biodbChebi.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2023-05-30 01:50:55.292][biodb::testContext]
biodb.INFO [2023-05-30 01:50:55.295][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:50:55.297][biodb::testContext] Test context - Generic tests
biodb.INFO [2023-05-30 01:50:55.299][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:50:55.301][biodb::testContext]
biodb.INFO [2023-05-30 01:50:55.322][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:50:55.325][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-05-30 01:50:55.334][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:50:55.336][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-05-30 01:50:55.338][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-05-30 01:50:55.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.343][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-05-30 01:50:55.371][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-05-30 01:50:55.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.376][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-05-30 01:50:55.378][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-05-30 01:50:55.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.384][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-05-30 01:50:55.385][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-05-30 01:50:55.387][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-05-30 01:50:55.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.392][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-05-30 01:50:55.394][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-05-30 01:50:55.395][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-05-30 01:50:55.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.401][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-05-30 01:50:55.402][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-05-30 01:50:55.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.408][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-05-30 01:50:55.410][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-05-30 01:50:55.411][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-05-30 01:50:55.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.417][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-05-30 01:50:55.418][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-05-30 01:50:55.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.424][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-05-30 01:50:55.425][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-05-30 01:50:55.427][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-05-30 01:50:55.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.433][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:50:55.434][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-05-30 01:50:55.436][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-05-30 01:50:55.437][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-05-30 01:50:55.439][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-05-30 01:50:55.440][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-05-30 01:50:55.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.446][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-05-30 01:50:55.447][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-05-30 01:50:55.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.453][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-05-30 01:50:55.454][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-05-30 01:50:55.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.460][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-05-30 01:50:55.462][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-05-30 01:50:55.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.467][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-05-30 01:50:55.469][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-05-30 01:50:55.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.474][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-05-30 01:50:55.476][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-05-30 01:50:55.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.481][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:50:55.483][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-05-30 01:50:55.487][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-05-30 01:50:55.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.493][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-05-30 01:50:55.494][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-05-30 01:50:55.496][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-05-30 01:50:55.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.506][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-05-30 01:50:55.554][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.588][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-05-30 01:50:55.590][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.591][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:50:55.592][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.594][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.595][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.596][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.598][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:50:55.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:50:55.601][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.602][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-05-30 01:50:55.603][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:50:55.605][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.606][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.607][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:50:55.607][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:50:55.607][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:50:55.607][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:50:55.607][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:50:55.609][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:50:55.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.613][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:50:55.614][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.616][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.618][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.619][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:50:55.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:50:55.622][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.623][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.625][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-05-30 01:50:55.627][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.629][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:50:55.630][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.631][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:50:55.633][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.634][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.636][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.637][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.638][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:50:55.640][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:50:55.641][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.643][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-05-30 01:50:55.644][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:50:55.645][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.647][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.648][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:50:55.648][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:50:55.648][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:50:55.648][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:50:55.648][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:50:55.649][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:50:55.651][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:50:55.655][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.656][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.657][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.659][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.660][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:50:55.661][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:50:55.662][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.664][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.665][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-05-30 01:50:55.668][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.669][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-05-30 01:50:55.671][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.672][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:50:55.673][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.675][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.676][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.678][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.679][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:50:55.680][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:50:55.682][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.683][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-05-30 01:50:55.684][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:50:55.686][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.687][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.689][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.690][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:50:55.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.694][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:50:55.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.698][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.699][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.700][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:50:55.702][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:50:55.703][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.705][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.706][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-05-30 01:50:55.709][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.710][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:50:55.712][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:50:55.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.716][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.717][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.719][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.720][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:50:55.721][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:50:55.723][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.724][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-05-30 01:50:55.725][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:50:55.727][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.728][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:55.730][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.731][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:50:55.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.734][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.735][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:50:55.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:55.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:55.739][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:50:55.740][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:50:55.743][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:50:55.744][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:55.745][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:50:55.751][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:50:55.752][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:55.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:55.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:55.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:55.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:55.859][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-05-30 01:50:55.865][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-05-30 01:50:55.867][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-05-30 01:50:55.869][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-05-30 01:50:55.871][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:50:55.873][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-05-30 01:50:55.875][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-05-30 01:50:55.877][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-05-30 01:50:55.879][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-05-30 01:50:55.881][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-05-30 01:50:55.883][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:50:55.885][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-05-30 01:50:55.887][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-05-30 01:50:55.889][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-05-30 01:50:55.891][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-05-30 01:50:55.893][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-05-30 01:50:55.894][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-05-30 01:50:55.896][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-05-30 01:50:55.898][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:50:55.900][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-05-30 01:50:55.902][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-05-30 01:50:55.904][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-05-30 01:50:55.906][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-05-30 01:50:55.908][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-05-30 01:50:55.910][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-05-30 01:50:55.912][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-05-30 01:50:55.914][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-05-30 01:50:55.916][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-05-30 01:50:55.918][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-05-30 01:50:55.920][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-05-30 01:50:55.922][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-05-30 01:50:55.931][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-05-30 01:50:55.933][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-05-30 01:50:55.935][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-05-30 01:50:55.937][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-05-30 01:50:55.939][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-05-30 01:50:55.941][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-05-30 01:50:55.943][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-05-30 01:50:55.945][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-05-30 01:50:55.947][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-05-30 01:50:55.949][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-05-30 01:50:55.951][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-05-30 01:50:55.953][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-05-30 01:50:55.955][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-05-30 01:50:55.957][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-05-30 01:50:55.959][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-05-30 01:50:55.961][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-05-30 01:50:55.963][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-05-30 01:50:55.965][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-05-30 01:50:55.967][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-05-30 01:50:55.969][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-05-30 01:50:55.971][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-05-30 01:50:55.973][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-05-30 01:50:55.974][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-05-30 01:50:55.976][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-05-30 01:50:55.978][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-05-30 01:50:55.980][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-05-30 01:50:55.982][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-05-30 01:50:55.984][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-05-30 01:50:55.986][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-05-30 01:50:55.988][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-05-30 01:50:55.990][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-05-30 01:50:55.992][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-05-30 01:50:55.994][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-05-30 01:50:55.996][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-05-30 01:50:55.998][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-05-30 01:50:56.000][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:50:56.002][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:50:56.004][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-05-30 01:50:56.006][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-05-30 01:50:56.008][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-05-30 01:50:56.010][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-05-30 01:50:56.012][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-05-30 01:50:56.014][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-05-30 01:50:56.016][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-05-30 01:50:56.018][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-05-30 01:50:56.020][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-05-30 01:50:56.022][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-05-30 01:50:56.024][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-05-30 01:50:56.026][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-05-30 01:50:56.028][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-05-30 01:50:56.030][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-05-30 01:50:56.032][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-05-30 01:50:56.040][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-05-30 01:50:56.042][initialize] This is biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:50:56.046][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:50:56.048][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.050][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:50:56.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:50:56.209][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-05-30 01:50:56.222][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-05-30 01:50:56.224][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:56.226][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-05-30 01:50:56.227][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:56.229][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:50:56.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:56.231][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:50:56.233][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:56.234][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-05-30 01:50:56.236][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-05-30 01:50:56.238][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:50:56.240][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:56.241][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-05-30 01:50:56.242][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-05-30 01:50:56.244][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-05-30 01:50:56.245][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-05-30 01:50:56.247][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:50:56.247][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:50:56.247][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:50:56.248][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-05-30 01:50:56.250][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:56.251][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:56.252][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:50:56.254][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:50:56.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:50:56.256][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:50:56.258][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-05-30 01:50:56.258][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-05-30 01:50:56.259][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:50:56.260][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:50:56.262][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-05-30 01:50:56.263][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-05-30 01:50:56.263][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-05-30 01:50:56.271][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:50:56.281][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:50:56.283][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-05-30 01:50:56.285][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:50:56.287][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:50:56.289][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:50:56.321][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-05-30 01:50:56.322][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-05-30 01:50:56.328][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-05-30 01:50:56.333][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-05-30 01:50:56.339][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:50:56.340][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:50:56.342][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-05-30 01:50:56.344][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-05-30 01:50:56.365][biodb::testThat]
biodb.INFO [2023-05-30 01:50:56.367][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-05-30 01:50:56.368][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:56.369][biodb::testThat]
biodb.TRACE[2023-05-30 01:50:56.375][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.3.0/site-library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2023-05-30 01:50:56.381][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:50:56.385][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:50:56.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:50:56.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:56.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:56.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:56.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:56.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:56.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:50:56.433][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.436][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.438][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.466][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:56.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:56.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.470][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:56.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:56.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.518][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:56.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:56.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.522][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:56.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:56.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:56.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:56.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.537][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:56.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.552][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:56.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:56.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.568][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:56.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:56.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.579][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:50:56.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:56.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.583][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:50:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:56.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.598][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:56.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.609][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:56.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.613][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.624][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:50:56.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.629][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:50:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:56.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.644][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:56.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:56.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:50:56.774][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2023-05-30 01:50:56.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:56.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:56.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-05-30 01:50:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-05-30 01:50:56.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-05-30 01:50:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-05-30 01:50:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-05-30 01:50:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-05-30 01:50:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-05-30 01:50:56.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-05-30 01:50:56.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.018][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.023][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.062][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.097][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.101][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.136][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.140][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.179][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.218][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.252][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.257][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.325][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.329][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.363][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.367][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.406][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.444][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.483][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.500][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.504][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.512][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.516][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.524][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.528][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.540][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.552][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.564][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.572][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.576][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.588][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.596][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.600][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.608][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.613][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.627][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.632][ef$get] fields variable is a list.
biodb.INFO [2023-05-30 01:50:57.641][biodb::testThat]
biodb.INFO [2023-05-30 01:50:57.642][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-05-30 01:50:57.643][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:57.645][biodb::testThat]
biodb.DEBUG[2023-05-30 01:50:57.664][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2023-05-30 01:50:57.674][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:50:57.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2023-05-30 01:50:57.682][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:50:57.683][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2023-05-30 01:50:57.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:50:57.748][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:50:57.749][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:50:57.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:50:57.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:50:57.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:50:57.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:50:57.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:50:57.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:50:57.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:50:57.769][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.773][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.806][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.811][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:50:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:50:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.821][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.825][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:50:57.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:50:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.840][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:57.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.855][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.870][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:50:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.881][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:50:57.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.885][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:50:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.900][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.910][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.923][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:57.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:57.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:50:57.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.939][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:50:57.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:50:57.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.955][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:50:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:50:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:50:57.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:58.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:50:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:50:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:50:58.028][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2023-05-30 01:50:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-05-30 01:50:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-05-30 01:50:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-05-30 01:50:58.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-05-30 01:50:58.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-05-30 01:50:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-05-30 01:50:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-05-30 01:50:58.055][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.057][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-05-30 01:50:58.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:58.059][biodb::testThat]
biodb.TRACE[2023-05-30 01:50:58.063][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.067][ef$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:50:58.069][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2023-05-30 01:50:58.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:50:58.127][function(conn, opt)] With value "squalene".
biodb.DEBUG[2023-05-30 01:50:58.144][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-05-30 01:50:58.172][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:50:58.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-05-30 01:50:58.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:50:58.198][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-05-30 01:50:58.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:50:58.243][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:50:58.245][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:50:58.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:50:58.250][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-05-30 01:50:58.252][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2023-05-30 01:50:58.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:58.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:50:58.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.277][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.283][ef$get] fields variable is a list.
biodb.INFO [2023-05-30 01:50:58.285][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.287][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-05-30 01:50:58.288][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:58.289][biodb::testThat]
biodb.TRACE[2023-05-30 01:50:58.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:50:58.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:50:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:50:58.434][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:50:58.438][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:50:58.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:50:58.442][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:50:58.444][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2023-05-30 01:50:58.467][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.468][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-05-30 01:50:58.470][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:58.471][biodb::testThat]
biodb.TRACE[2023-05-30 01:50:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-05-30 01:50:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-05-30 01:50:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-05-30 01:50:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-05-30 01:50:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:50:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:50:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:50:58.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:50:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-05-30 01:50:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-05-30 01:50:58.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-05-30 01:50:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:50:58.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-05-30 01:50:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-05-30 01:50:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:50:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-05-30 01:50:58.657][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.658][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-05-30 01:50:58.660][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:58.661][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.668][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.669][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-05-30 01:50:58.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:58.672][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.679][biodb::testThat]
biodb.INFO [2023-05-30 01:50:58.680][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-05-30 01:50:58.682][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:50:58.683][biodb::testThat]
biodb.DEBUG[2023-05-30 01:50:58.688][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2023-05-30 01:51:00.140][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2023-05-30 01:51:21.327][biodb::testThat]
biodb.INFO [2023-05-30 01:51:21.329][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-05-30 01:51:21.330][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:21.332][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:27.002][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2023-05-30 01:51:30.033][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:30.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:30.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.037][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:30.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.043][ef$get] fields variable is a list.
biodb.INFO [2023-05-30 01:51:30.045][biodb::testThat]
biodb.INFO [2023-05-30 01:51:30.047][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2023-05-30 01:51:30.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:30.049][biodb::testThat]
biodb.TRACE[2023-05-30 01:51:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:30.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:30.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:30.244][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:30.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:51:30.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:30.249][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-05-30 01:51:30.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:30.360][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:30.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:51:30.364][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:30.366][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2023-05-30 01:51:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-05-30 01:51:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-05-30 01:51:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:30.496][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:30.500][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:30.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-05-30 01:51:30.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:30.507][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-05-30 01:51:30.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:30.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:30.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:30.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:30.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:30.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:30.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:30.527][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2023-05-30 01:51:30.593][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:30.595][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2023-05-30 01:51:30.597][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:30.600][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2023-05-30 01:51:30.603][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:30.630][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:30.632][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:30.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:30.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:30.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:30.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:30.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:30.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:30.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:30.652][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.657][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.668][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:30.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:30.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.673][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.692][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:30.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:30.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.697][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:30.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:30.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:30.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.713][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.725][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:30.726][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:30.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.729][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:30.742][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:30.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.745][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.746][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:30.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.751][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:30.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:30.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.766][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:30.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.778][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:30.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.782][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:30.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:30.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.798][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:30.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.815][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:30.887][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2023-05-30 01:51:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:30.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:30.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:30.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-05-30 01:51:30.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:30.930][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-05-30 01:51:30.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:30.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:30.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:30.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:30.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:30.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:30.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:30.994][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:30.999][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:31.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-05-30 01:51:31.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:31.005][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-05-30 01:51:31.066][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:31.071][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:31.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:51:31.075][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:31.077][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-05-30 01:51:31.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:31.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:31.151][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2023-05-30 01:51:31.153][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:31.155][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2023-05-30 01:51:31.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:31.160][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2023-05-30 01:51:31.161][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:31.188][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:31.189][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:31.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:31.220][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.225][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.236][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:31.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.241][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.243][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:31.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:31.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.248][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:31.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:31.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.254][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:31.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:31.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.261][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.262][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:31.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:31.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.267][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.269][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:31.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.273][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:31.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.279][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.281][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:31.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.286][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:31.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.297][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:31.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:31.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.302][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:31.315][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:31.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.318][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:31.383][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2023-05-30 01:51:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:31.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:31.434][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2023-05-30 01:51:31.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:31.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2023-05-30 01:51:31.440][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:31.443][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2023-05-30 01:51:31.444][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:31.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:31.482][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:31.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:31.503][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.508][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.520][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:31.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:31.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.524][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.526][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:31.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.531][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:31.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:31.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.537][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:31.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:31.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.543][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.545][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:31.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:31.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.550][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.552][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:31.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.556][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:31.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:31.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.562][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.564][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:31.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:31.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.569][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.581][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:31.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:31.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.585][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:31.599][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.602][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:31.669][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2023-05-30 01:51:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:31.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:31.722][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2023-05-30 01:51:31.723][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:31.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2023-05-30 01:51:31.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:31.731][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2023-05-30 01:51:31.732][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:31.770][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:31.771][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:31.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:31.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:31.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:31.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:31.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:31.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:31.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:31.792][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.796][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.807][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:31.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:31.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.812][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.813][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:31.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.819][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:31.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.825][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:31.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:31.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.831][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:31.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:31.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.837][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.839][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:31.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.843][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:31.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:31.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.849][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.851][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:31.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:31.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.855][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:31.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:31.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:31.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.876][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:31.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:31.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:31.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.897][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:31.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:31.967][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2023-05-30 01:51:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:31.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:32.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:32.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:32.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:32.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:32.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:32.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:32.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:32.019][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2023-05-30 01:51:32.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:32.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2023-05-30 01:51:32.027][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:32.032][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2023-05-30 01:51:32.049][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:32.078][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:32.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:32.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:32.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:32.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:32.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:32.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:32.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:32.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:32.103][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.108][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.120][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:32.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:32.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.125][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.137][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:32.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:32.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.141][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:32.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:32.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:32.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.159][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.176][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.192][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.204][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:32.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.208][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.224][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.236][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:32.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:32.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.240][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.253][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:32.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:32.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.257][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:32.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:32.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.273][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:32.356][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2023-05-30 01:51:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:32.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:32.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:32.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:32.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:32.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:32.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:32.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:32.392][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2023-05-30 01:51:32.394][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:32.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2023-05-30 01:51:32.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:32.401][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2023-05-30 01:51:32.402][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:32.430][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:32.432][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:32.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:32.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:32.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:32.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:32.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:32.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:32.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:32.452][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.457][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.468][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:32.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.473][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.484][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:32.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:32.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.489][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:32.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:32.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:32.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.504][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.520][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.536][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.547][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:32.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.552][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.568][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.579][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:32.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:32.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.592][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:32.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:32.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:32.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:32.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.608][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:32.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.624][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:32.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:32.696][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2023-05-30 01:51:32.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:32.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:32.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:32.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:32.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:32.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:32.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:32.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:32.731][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2023-05-30 01:51:32.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:32.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2023-05-30 01:51:32.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:32.739][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2023-05-30 01:51:32.741][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:32.767][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:32.769][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:32.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:32.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:32.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:32.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:32.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:32.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:32.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:32.789][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.794][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.805][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:32.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:32.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.809][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.821][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:32.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:32.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.825][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:32.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:32.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.849][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.860][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.865][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:32.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.881][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.882][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:32.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.887][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:32.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.903][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.914][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:32.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:32.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.919][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.931][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:32.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:32.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.935][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:32.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.951][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:33.025][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2023-05-30 01:51:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:33.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:33.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:33.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:33.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:33.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:33.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:33.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:33.060][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2023-05-30 01:51:33.062][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:33.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2023-05-30 01:51:33.066][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:33.069][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2023-05-30 01:51:33.070][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:33.097][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:33.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:33.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:33.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:33.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:33.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:33.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:33.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:33.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:33.133][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.138][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.149][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:33.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:33.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.154][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.165][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:33.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:33.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.170][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.182][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:33.183][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:33.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.186][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.202][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:33.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:33.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.218][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.219][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:33.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.224][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.240][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.251][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:33.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.255][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:33.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.267][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:33.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:33.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.271][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.283][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:33.284][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:33.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.287][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:33.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:33.361][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2023-05-30 01:51:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:33.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:33.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:33.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:33.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:33.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:33.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:33.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:33.405][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2023-05-30 01:51:33.406][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:33.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2023-05-30 01:51:33.410][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:33.413][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2023-05-30 01:51:33.415][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:33.442][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:33.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:33.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:33.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:33.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:33.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:33.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:33.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:33.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:33.464][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.469][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.480][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:33.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:33.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.485][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.496][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:33.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:33.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.501][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.512][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:33.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:33.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.517][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.533][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:33.546][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:33.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.549][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.550][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:33.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.555][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:33.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.571][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.582][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:33.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:33.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.587][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.599][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:33.601][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:33.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.604][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:33.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:33.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.620][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:33.703][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2023-05-30 01:51:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:33.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:33.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:33.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:33.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:33.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:33.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:33.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:33.738][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2023-05-30 01:51:33.740][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:33.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2023-05-30 01:51:33.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:33.746][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2023-05-30 01:51:33.748][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:33.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:33.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:33.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:33.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:33.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:33.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:33.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:33.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:33.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:33.797][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.801][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.813][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:33.814][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:33.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.817][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:33.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.828][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:33.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:33.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.833][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:33.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:33.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:33.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.849][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.865][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:33.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:33.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:33.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.881][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.883][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:33.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.887][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.911][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.923][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:33.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.927][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:33.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:33.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:33.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.943][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:33.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:33.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.959][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:34.034][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2023-05-30 01:51:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:34.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:34.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:34.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:34.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:34.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:34.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:34.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:34.070][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2023-05-30 01:51:34.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:34.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2023-05-30 01:51:34.076][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:34.078][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2023-05-30 01:51:34.080][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:34.106][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:34.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:34.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:34.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:34.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:34.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:34.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:34.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:34.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:34.129][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.133][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.145][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:34.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.149][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.161][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:34.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:34.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.201][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:34.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:34.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.218][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.234][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:34.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:34.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.250][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.252][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:34.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.257][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.273][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.285][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:34.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:34.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.289][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:34.303][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:34.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.306][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:34.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:34.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.322][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:34.399][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2023-05-30 01:51:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:34.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:34.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:34.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:34.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:34.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:34.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:34.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:34.434][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2023-05-30 01:51:34.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:34.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2023-05-30 01:51:34.441][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:34.444][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2023-05-30 01:51:34.446][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:34.481][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:34.483][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:34.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:34.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:34.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:34.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:34.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:34.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:34.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:34.504][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.509][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.521][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:34.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:34.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.525][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.537][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:34.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:34.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.542][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:34.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.558][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.565][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.567][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:34.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:34.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.571][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.573][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:34.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.577][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:34.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.594][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.606][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:34.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:34.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.610][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:34.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:34.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.627][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:34.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:34.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.643][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:34.710][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2023-05-30 01:51:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:34.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:34.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:34.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:34.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:34.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:34.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:34.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:34.754][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2023-05-30 01:51:34.756][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:34.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2023-05-30 01:51:34.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:34.763][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2023-05-30 01:51:34.765][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:34.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:34.794][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:34.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:34.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:34.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:34.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:34.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:34.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:34.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:34.815][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.820][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.831][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:34.833][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:34.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.836][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.847][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:34.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:34.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.852][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:34.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:34.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.868][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:34.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.875][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:34.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.881][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.883][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:34.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.888][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.904][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.915][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:34.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:34.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.920][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.932][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:34.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:34.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.936][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:34.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:34.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.953][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:34.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:35.031][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2023-05-30 01:51:35.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:35.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:35.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:35.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:35.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:35.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:35.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:35.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:35.102][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2023-05-30 01:51:35.103][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:35.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2023-05-30 01:51:35.108][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:35.111][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2023-05-30 01:51:35.113][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:35.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:35.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:35.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:35.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:35.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:35.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:35.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:35.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:35.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:35.169][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.174][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.187][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:35.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.191][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:35.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.204][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:35.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.209][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:35.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:35.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.227][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.244][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:35.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:35.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.261][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.263][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:35.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.268][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.286][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.299][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:35.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.304][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:35.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:35.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.321][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:35.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:35.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.338][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:35.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:35.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:35.427][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2023-05-30 01:51:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:35.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:35.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:35.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:35.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:35.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:35.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:35.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:35.463][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2023-05-30 01:51:35.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:35.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2023-05-30 01:51:35.469][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:35.471][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2023-05-30 01:51:35.473][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:35.501][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:35.503][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:35.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:35.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:35.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:35.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:35.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:35.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:35.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:35.524][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.529][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.540][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:35.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.545][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:35.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.557][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:35.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.561][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:35.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:35.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:35.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.578][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:35.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.594][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.606][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:35.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:35.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.611][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.612][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:35.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.626][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.642][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.653][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:35.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:35.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.657][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:35.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:35.672][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.673][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:35.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:35.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.690][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:35.762][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2023-05-30 01:51:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:35.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:35.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:35.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:35.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:35.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:35.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:35.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:35.797][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2023-05-30 01:51:35.799][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:35.801][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2023-05-30 01:51:35.803][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:35.805][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2023-05-30 01:51:35.807][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:35.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:35.835][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:35.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:35.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:35.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:35.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:35.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:35.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:35.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:35.855][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.860][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.871][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:35.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:35.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.875][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.897][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:35.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:35.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.901][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:35.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:35.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.917][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.931][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.934][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:35.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.950][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.951][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:35.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.956][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.972][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:35.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.983][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:35.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:35.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.988][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:35.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:36.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:36.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.004][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:36.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:36.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:36.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.020][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.095][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2023-05-30 01:51:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:36.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:36.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:36.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:36.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:36.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:36.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:36.131][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2023-05-30 01:51:36.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:36.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2023-05-30 01:51:36.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:36.141][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2023-05-30 01:51:36.142][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:36.179][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:36.214][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:36.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:36.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:36.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:36.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:36.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:36.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:36.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:36.236][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.240][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.252][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:36.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.256][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.268][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:36.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:36.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.272][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:36.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:36.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.288][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.305][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:36.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:36.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.322][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.324][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:36.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.328][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.344][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.355][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:36.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:36.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.360][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.371][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:36.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:36.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.376][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:36.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.392][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:36.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.475][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2023-05-30 01:51:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:36.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:36.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:36.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:36.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:36.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:36.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:36.513][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2023-05-30 01:51:36.514][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:36.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2023-05-30 01:51:36.520][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:36.523][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2023-05-30 01:51:36.524][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:36.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:36.553][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:36.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:36.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:36.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:36.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:36.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:36.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:36.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:36.574][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.578][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.589][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:36.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:36.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.594][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.606][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:36.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:36.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.610][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:36.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:36.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.626][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.642][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:36.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:36.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.658][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.660][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:36.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.664][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.680][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.692][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:36.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:36.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.696][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:36.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:36.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.714][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:36.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:36.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.734][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:36.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:36.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.738][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.814][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2023-05-30 01:51:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:36.889][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:36.891][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:51:36.893][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:36.895][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-05-30 01:51:36.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:36.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:36.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:36.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:36.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:36.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:36.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:36.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:36.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:36.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:36.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:36.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:36.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:36.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:37.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:37.803][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:37.805][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2023-05-30 01:51:37.807][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:37.810][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2023-05-30 01:51:37.814][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:37.819][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:37.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2023-05-30 01:51:37.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:37.834][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2023-05-30 01:51:37.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:37.854][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2023-05-30 01:51:37.856][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:37.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2023-05-30 01:51:37.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:37.863][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2023-05-30 01:51:37.864][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:37.891][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:37.893][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:37.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:37.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:37.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:37.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:37.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:37.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:37.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:37.914][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:37.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.919][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.931][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:37.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:37.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.936][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.948][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:37.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:37.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.952][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:37.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.969][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:37.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:37.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.986][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:37.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:37.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:38.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.002][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:38.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:38.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.014][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:38.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:38.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.018][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.035][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.047][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:38.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:38.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.051][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:38.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:38.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.068][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.080][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:38.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:38.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.084][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.172][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2023-05-30 01:51:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:38.245][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2023-05-30 01:51:38.247][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:38.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2023-05-30 01:51:38.251][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:38.254][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2023-05-30 01:51:38.256][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:38.283][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:38.285][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:38.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.307][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.311][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.323][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:38.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.328][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:38.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:38.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.340][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:38.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:38.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.345][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:38.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:38.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.361][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:38.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:38.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:38.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.388][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.401][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:38.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:38.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.406][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.408][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:38.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:38.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.413][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:38.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.430][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.443][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:38.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.448][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.461][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:38.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:38.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.466][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:38.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:38.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:38.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.482][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.557][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2023-05-30 01:51:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.633][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:38.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:38.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:51:38.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:38.651][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-05-30 01:51:38.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:38.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:38.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:38.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:38.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:38.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:38.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:38.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:39.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:39.430][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-05-30 01:51:39.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:39.434][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-05-30 01:51:39.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:39.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:39.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:39.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:39.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:39.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:39.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:39.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:40.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:40.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-05-30 01:51:40.210][biodb::testThat]
biodb.INFO [2023-05-30 01:51:40.211][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-05-30 01:51:40.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:40.214][biodb::testThat]
biodb.TRACE[2023-05-30 01:51:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-05-30 01:51:40.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-05-30 01:51:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:40.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:40.346][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:40.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-05-30 01:51:40.350][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:40.352][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-05-30 01:51:40.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.393][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:40.398][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:40.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-05-30 01:51:40.402][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:40.404][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-05-30 01:51:40.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.444][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:40.448][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:40.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-05-30 01:51:40.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:40.454][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-05-30 01:51:40.458][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-05-30 01:51:40.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.490][private$selectFields]
biodb.TRACE[2023-05-30 01:51:40.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:40.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:40.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.501][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.506][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.509][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.523][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.525][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:40.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-05-30 01:51:40.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.592][private$selectFields]
biodb.TRACE[2023-05-30 01:51:40.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:40.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:40.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.602][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.608][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.611][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:40.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.617][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.619][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-05-30 01:51:40.640][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-05-30 01:51:40.641][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-05-30 01:51:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:40.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:40.849][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:40.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-05-30 01:51:40.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:40.856][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-05-30 01:51:40.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:40.865][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:40.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-05-30 01:51:40.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:40.871][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-05-30 01:51:40.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:40.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:40.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:40.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:40.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:40.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:40.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:40.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.022][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-05-30 01:51:41.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.086][private$selectFields]
biodb.TRACE[2023-05-30 01:51:41.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:41.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:41.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.096][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.101][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.110][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.130][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-05-30 01:51:41.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.208][private$selectFields]
biodb.TRACE[2023-05-30 01:51:41.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:41.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:41.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.218][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.223][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.255][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-05-30 01:51:41.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.307][private$selectFields]
biodb.TRACE[2023-05-30 01:51:41.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:41.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:41.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.317][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.323][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.326][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.331][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.333][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-05-30 01:51:41.354][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-05-30 01:51:41.355][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-05-30 01:51:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-05-30 01:51:41.375][biodb::testThat]
biodb.INFO [2023-05-30 01:51:41.377][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-05-30 01:51:41.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:41.379][biodb::testThat]
biodb.TRACE[2023-05-30 01:51:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-05-30 01:51:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-05-30 01:51:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:41.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:41.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:41.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-05-30 01:51:41.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:41.513][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-05-30 01:51:41.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:41.556][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:41.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-05-30 01:51:41.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:41.562][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-05-30 01:51:41.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.603][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:41.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:41.609][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-05-30 01:51:41.611][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:41.613][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-05-30 01:51:41.617][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-05-30 01:51:41.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.649][private$selectFields]
biodb.TRACE[2023-05-30 01:51:41.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:41.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:41.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.659][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.665][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.674][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.676][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-05-30 01:51:41.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.727][private$selectFields]
biodb.TRACE[2023-05-30 01:51:41.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:41.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:41.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.737][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.743][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:41.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.751][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.761][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-05-30 01:51:41.784][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-05-30 01:51:41.786][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-05-30 01:51:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:41.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:41.904][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:41.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-05-30 01:51:41.908][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:41.910][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-05-30 01:51:41.914][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:41.918][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:41.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-05-30 01:51:41.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:41.924][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-05-30 01:51:41.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:41.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:41.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:41.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:41.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:41.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:41.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:41.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.040][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-05-30 01:51:42.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.105][private$selectFields]
biodb.TRACE[2023-05-30 01:51:42.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:42.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:42.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.115][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.120][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.123][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.129][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.130][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-05-30 01:51:42.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.181][private$selectFields]
biodb.TRACE[2023-05-30 01:51:42.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:42.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:42.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.192][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.198][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.207][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.208][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:42.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-05-30 01:51:42.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.259][private$selectFields]
biodb.TRACE[2023-05-30 01:51:42.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:42.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:42.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.269][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.275][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.283][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.285][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:42.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-05-30 01:51:42.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-05-30 01:51:42.316][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-05-30 01:51:42.328][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:42.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-05-30 01:51:42.335][biodb::testThat]
biodb.INFO [2023-05-30 01:51:42.337][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-05-30 01:51:42.338][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:42.339][biodb::testThat]
biodb.TRACE[2023-05-30 01:51:42.344][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-05-30 01:51:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-05-30 01:51:42.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:42.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:42.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:42.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-05-30 01:51:42.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:42.467][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-05-30 01:51:42.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.507][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:42.512][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:42.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-05-30 01:51:42.515][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:42.517][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-05-30 01:51:42.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.557][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:42.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:42.563][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-05-30 01:51:42.574][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:42.576][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-05-30 01:51:42.580][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-05-30 01:51:42.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.614][private$selectFields]
biodb.TRACE[2023-05-30 01:51:42.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:42.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:42.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.625][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.631][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.634][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.640][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.641][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-05-30 01:51:42.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.692][private$selectFields]
biodb.TRACE[2023-05-30 01:51:42.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:42.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:42.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.701][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.707][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.710][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:42.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.716][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.717][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-05-30 01:51:42.738][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-05-30 01:51:42.740][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-05-30 01:51:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:42.887][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:42.891][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:42.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-05-30 01:51:42.895][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:42.897][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-05-30 01:51:42.901][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:42.905][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:42.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-05-30 01:51:42.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:42.911][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-05-30 01:51:42.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:42.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:42.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:42.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:42.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:42.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:42.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:42.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:43.021][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-05-30 01:51:43.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:43.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:43.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:43.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:43.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.053][private$selectFields]
biodb.TRACE[2023-05-30 01:51:43.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:43.056][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:43.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.063][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.069][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.078][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.079][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-05-30 01:51:43.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:43.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:43.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:43.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:43.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.139][private$selectFields]
biodb.TRACE[2023-05-30 01:51:43.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:43.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:43.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.149][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.155][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.164][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.165][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-05-30 01:51:43.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:43.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:43.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:43.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:43.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.217][private$selectFields]
biodb.TRACE[2023-05-30 01:51:43.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-05-30 01:51:43.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-05-30 01:51:43.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.226][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.232][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.235][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-05-30 01:51:43.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.240][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.242][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-05-30 01:51:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-05-30 01:51:43.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-05-30 01:51:43.263][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-05-30 01:51:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-05-30 01:51:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-05-30 01:51:43.301][biodb::testThat]
biodb.INFO [2023-05-30 01:51:43.302][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2023-05-30 01:51:43.304][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:43.305][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:43.308][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2023-05-30 01:51:43.309][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:43.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2023-05-30 01:51:43.314][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:43.316][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2023-05-30 01:51:43.318][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:43.351][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:43.353][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:43.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:43.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:43.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:43.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:43.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.373][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.378][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.390][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:43.391][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:43.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.394][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.396][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:43.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:43.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.401][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:43.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:43.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.407][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.413][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.421][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.423][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:43.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.427][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.433][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.435][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:43.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:43.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.440][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:43.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:43.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.446][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.448][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:43.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:43.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.452][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:43.517][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2023-05-30 01:51:43.519][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2023-05-30 01:51:43.528][biodb::testThat]
biodb.INFO [2023-05-30 01:51:43.529][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2023-05-30 01:51:43.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:43.532][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:43.546][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2023-05-30 01:51:43.548][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2023-05-30 01:51:43.550][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2023-05-30 01:51:43.552][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2023-05-30 01:51:43.554][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-05-30 01:51:43.558][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2023-05-30 01:51:43.560][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:43.586][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2023-05-30 01:51:43.588][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:43.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:43.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:43.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:43.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:43.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.618][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.624][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.636][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:43.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:43.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.640][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.642][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:43.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:43.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.647][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:43.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:43.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.653][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.659][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.666][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.667][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:43.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:43.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.672][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.677][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.678][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.680][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:43.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:43.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.684][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.687][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:43.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:43.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.691][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:43.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:43.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.697][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:43.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:43.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:43.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:43.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:43.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:43.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:43.763][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.768][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.780][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:43.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:43.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.784][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.796][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:43.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:43.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.801][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:43.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:43.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:43.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.817][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.835][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.850][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.862][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:43.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.875][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.892][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:43.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.903][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:43.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:43.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.908][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:43.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.920][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:43.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.924][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:43.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:43.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.936][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:43.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:43.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.940][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:43.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:43.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:43.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:44.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:44.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:44.015][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.019][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.031][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:44.032][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:44.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.036][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.048][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:44.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.052][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:44.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:44.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.068][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:44.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:44.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.084][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:44.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:44.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.100][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.111][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:44.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:44.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.115][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:44.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:44.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.141][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.152][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:44.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:44.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.156][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.168][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:44.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:44.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.173][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:44.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:44.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:44.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.190][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:44.298][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2023-05-30 01:51:44.300][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2023-05-30 01:51:44.301][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2023-05-30 01:51:44.318][biodb::testThat]
biodb.INFO [2023-05-30 01:51:44.319][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2023-05-30 01:51:44.321][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:44.322][biodb::testThat]
biodb.INFO [2023-05-30 01:51:44.353][biodb::testThat]
biodb.INFO [2023-05-30 01:51:44.355][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2023-05-30 01:51:44.356][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:44.357][biodb::testThat]
biodb.INFO [2023-05-30 01:51:44.368][biodb::testThat]
biodb.INFO [2023-05-30 01:51:44.369][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2023-05-30 01:51:44.371][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:44.372][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:44.384][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:44.389][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:44.391][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2023-05-30 01:51:44.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:44.396][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2023-05-30 01:51:44.417][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:44.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.421][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:44.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:44.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:44.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:44.427][ef$get] fields variable is a list.
biodb.INFO [2023-05-30 01:51:44.429][biodb::testThat]
biodb.INFO [2023-05-30 01:51:44.431][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2023-05-30 01:51:44.432][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:44.434][biodb::testThat]
biodb.ERROR[2023-05-30 01:51:44.454][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2023-05-30 01:51:44.476][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2023-05-30 01:51:44.491][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-05-30 01:51:44.493][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-05-30 01:51:44.494][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-05-30 01:51:44.496][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-05-30 01:51:44.497][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:44.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:44.500][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.502][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-05-30 01:51:44.518][biodb::testContext]
biodb.INFO [2023-05-30 01:51:44.519][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:51:44.521][biodb::testContext] Test context - Test conversions
biodb.INFO [2023-05-30 01:51:44.522][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:51:44.524][biodb::testContext]
biodb.INFO [2023-05-30 01:51:44.530][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:51:44.533][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-05-30 01:51:44.537][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:44.539][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-05-30 01:51:44.544][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-05-30 01:51:44.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.551][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-05-30 01:51:44.553][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-05-30 01:51:44.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.559][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-05-30 01:51:44.560][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-05-30 01:51:44.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.566][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-05-30 01:51:44.568][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-05-30 01:51:44.570][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-05-30 01:51:44.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.576][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-05-30 01:51:44.577][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-05-30 01:51:44.579][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-05-30 01:51:44.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.585][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-05-30 01:51:44.587][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-05-30 01:51:44.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.593][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-05-30 01:51:44.594][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-05-30 01:51:44.596][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-05-30 01:51:44.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.602][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-05-30 01:51:44.604][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-05-30 01:51:44.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.609][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-05-30 01:51:44.611][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-05-30 01:51:44.613][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-05-30 01:51:44.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.619][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:51:44.620][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-05-30 01:51:44.622][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-05-30 01:51:44.623][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-05-30 01:51:44.625][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-05-30 01:51:44.627][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-05-30 01:51:44.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.633][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-05-30 01:51:44.634][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-05-30 01:51:44.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.661][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-05-30 01:51:44.663][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-05-30 01:51:44.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.669][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-05-30 01:51:44.671][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-05-30 01:51:44.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.677][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-05-30 01:51:44.679][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-05-30 01:51:44.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.685][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-05-30 01:51:44.686][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-05-30 01:51:44.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.692][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:51:44.694][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-05-30 01:51:44.698][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-05-30 01:51:44.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.704][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-05-30 01:51:44.706][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-05-30 01:51:44.708][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-05-30 01:51:44.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.714][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-05-30 01:51:44.717][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.718][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-05-30 01:51:44.720][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:44.723][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.724][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.726][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.728][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.729][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:51:44.731][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:44.732][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.734][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-05-30 01:51:44.735][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:44.737][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.739][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.740][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:44.740][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:44.740][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:44.740][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:51:44.740][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:51:44.742][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:44.744][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:44.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.751][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.753][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.754][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:44.755][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:44.757][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.758][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.760][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-05-30 01:51:44.763][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.765][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:51:44.766][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.768][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:44.769][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.771][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.773][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.776][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:51:44.777][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:44.779][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.780][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-05-30 01:51:44.782][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:44.783][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.785][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.786][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:44.786][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:44.786][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:44.786][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:51:44.786][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:51:44.788][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:44.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.792][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:44.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.797][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.798][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.800][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:44.801][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:44.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.804][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.806][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-05-30 01:51:44.809][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.810][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-05-30 01:51:44.812][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.813][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:44.815][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.816][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.818][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.819][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.821][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:51:44.822][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:44.824][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.825][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-05-30 01:51:44.827][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:44.828][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.830][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.831][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.833][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:44.834][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.836][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.837][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:44.838][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.840][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.841][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.843][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.845][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:44.846][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:44.847][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.849][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.851][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-05-30 01:51:44.853][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.855][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:51:44.856][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.858][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:44.859][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.861][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.862][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.864][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.865][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:51:44.867][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:44.868][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.870][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-05-30 01:51:44.871][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:44.873][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.874][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:44.875][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.877][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:44.878][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.881][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:44.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:44.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:44.885][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:44.887][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.888][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:44.889][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:44.891][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:44.892][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:44.894][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:44.896][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:44.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:44.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:44.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:44.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:44.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.019][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-05-30 01:51:45.021][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-05-30 01:51:45.023][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-05-30 01:51:45.025][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-05-30 01:51:45.027][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:51:45.029][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-05-30 01:51:45.031][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-05-30 01:51:45.033][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-05-30 01:51:45.035][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-05-30 01:51:45.037][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-05-30 01:51:45.039][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:51:45.041][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-05-30 01:51:45.043][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-05-30 01:51:45.045][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-05-30 01:51:45.047][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-05-30 01:51:45.050][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-05-30 01:51:45.052][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-05-30 01:51:45.054][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-05-30 01:51:45.056][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:51:45.058][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-05-30 01:51:45.060][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-05-30 01:51:45.062][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-05-30 01:51:45.064][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-05-30 01:51:45.066][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-05-30 01:51:45.068][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-05-30 01:51:45.070][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-05-30 01:51:45.072][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-05-30 01:51:45.074][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-05-30 01:51:45.076][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-05-30 01:51:45.078][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-05-30 01:51:45.080][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-05-30 01:51:45.082][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-05-30 01:51:45.084][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-05-30 01:51:45.086][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-05-30 01:51:45.088][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-05-30 01:51:45.090][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-05-30 01:51:45.092][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-05-30 01:51:45.094][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-05-30 01:51:45.096][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-05-30 01:51:45.098][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-05-30 01:51:45.100][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-05-30 01:51:45.102][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-05-30 01:51:45.104][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-05-30 01:51:45.106][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-05-30 01:51:45.108][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-05-30 01:51:45.110][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-05-30 01:51:45.112][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-05-30 01:51:45.114][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-05-30 01:51:45.117][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-05-30 01:51:45.119][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-05-30 01:51:45.121][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-05-30 01:51:45.123][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-05-30 01:51:45.125][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-05-30 01:51:45.127][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-05-30 01:51:45.129][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-05-30 01:51:45.131][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-05-30 01:51:45.133][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-05-30 01:51:45.135][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-05-30 01:51:45.137][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-05-30 01:51:45.139][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-05-30 01:51:45.141][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-05-30 01:51:45.143][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-05-30 01:51:45.145][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-05-30 01:51:45.147][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-05-30 01:51:45.149][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-05-30 01:51:45.160][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-05-30 01:51:45.162][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:51:45.165][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:51:45.167][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-05-30 01:51:45.169][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-05-30 01:51:45.171][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-05-30 01:51:45.173][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-05-30 01:51:45.175][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-05-30 01:51:45.178][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-05-30 01:51:45.180][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-05-30 01:51:45.182][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-05-30 01:51:45.184][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-05-30 01:51:45.186][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-05-30 01:51:45.188][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-05-30 01:51:45.190][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-05-30 01:51:45.192][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-05-30 01:51:45.194][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-05-30 01:51:45.197][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-05-30 01:51:45.199][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-05-30 01:51:45.201][initialize] This is biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:51:45.203][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:45.204][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.206][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:45.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.366][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-05-30 01:51:45.368][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-05-30 01:51:45.371][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:45.372][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-05-30 01:51:45.374][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:45.375][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:45.377][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:45.378][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:45.379][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:45.381][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-05-30 01:51:45.382][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-05-30 01:51:45.384][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:45.385][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:45.387][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-05-30 01:51:45.388][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-05-30 01:51:45.390][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-05-30 01:51:45.391][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:45.393][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:45.393][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:45.393][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:45.601][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-05-30 01:51:45.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:45.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:45.605][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:45.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:45.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:45.609][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:45.611][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-05-30 01:51:45.611][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-05-30 01:51:45.612][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:45.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:45.615][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:45.616][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-05-30 01:51:45.616][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-05-30 01:51:45.618][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:51:45.620][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:51:45.622][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-05-30 01:51:45.624][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:51:45.627][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:51:45.629][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:51:45.633][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-05-30 01:51:45.635][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-05-30 01:51:45.637][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-05-30 01:51:45.639][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-05-30 01:51:45.641][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:51:45.642][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:51:45.644][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-05-30 01:51:45.645][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-05-30 01:51:45.647][biodb::testThat]
biodb.INFO [2023-05-30 01:51:45.649][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2023-05-30 01:51:45.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:45.651][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:45.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-05-30 01:51:45.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-05-30 01:51:45.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.668][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-05-30 01:51:45.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-05-30 01:51:45.680][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.683][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-05-30 01:51:45.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.707][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-05-30 01:51:45.711][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.716][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-05-30 01:51:45.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.774][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-05-30 01:51:45.783][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.785][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-05-30 01:51:45.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.808][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-05-30 01:51:45.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.814][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-05-30 01:51:45.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.862][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-05-30 01:51:45.866][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.868][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-05-30 01:51:45.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.887][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.892][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-05-30 01:51:45.896][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.898][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-05-30 01:51:45.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.922][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2023-05-30 01:51:45.925][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.928][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2023-05-30 01:51:45.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-05-30 01:51:45.950][biodb::testThat]
biodb.INFO [2023-05-30 01:51:45.951][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2023-05-30 01:51:45.953][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:45.954][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:45.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.964][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2023-05-30 01:51:45.967][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:45.970][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2023-05-30 01:51:45.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:45.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:45.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:45.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:45.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:45.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:45.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:45.992][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:45.996][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:45.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2023-05-30 01:51:46.000][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:46.003][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2023-05-30 01:51:46.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:46.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-05-30 01:51:46.023][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-05-30 01:51:46.024][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-05-30 01:51:46.026][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-05-30 01:51:46.027][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-05-30 01:51:46.029][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.031][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.034][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-05-30 01:51:46.040][biodb::testContext]
biodb.INFO [2023-05-30 01:51:46.042][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:51:46.043][biodb::testContext] Test context - Test web services
biodb.INFO [2023-05-30 01:51:46.045][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:51:46.046][biodb::testContext]
biodb.INFO [2023-05-30 01:51:46.052][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:51:46.055][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-05-30 01:51:46.060][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:46.062][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-05-30 01:51:46.063][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-05-30 01:51:46.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.069][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-05-30 01:51:46.070][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-05-30 01:51:46.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.076][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-05-30 01:51:46.077][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-05-30 01:51:46.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.083][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-05-30 01:51:46.084][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-05-30 01:51:46.086][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-05-30 01:51:46.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.091][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-05-30 01:51:46.092][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-05-30 01:51:46.094][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-05-30 01:51:46.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.099][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-05-30 01:51:46.101][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-05-30 01:51:46.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.106][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-05-30 01:51:46.107][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-05-30 01:51:46.109][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-05-30 01:51:46.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.114][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-05-30 01:51:46.116][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-05-30 01:51:46.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.128][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-05-30 01:51:46.130][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-05-30 01:51:46.131][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-05-30 01:51:46.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.137][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:51:46.138][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-05-30 01:51:46.140][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-05-30 01:51:46.141][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-05-30 01:51:46.143][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-05-30 01:51:46.144][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-05-30 01:51:46.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.149][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-05-30 01:51:46.151][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-05-30 01:51:46.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.156][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-05-30 01:51:46.158][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-05-30 01:51:46.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.163][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-05-30 01:51:46.164][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-05-30 01:51:46.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.170][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-05-30 01:51:46.171][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-05-30 01:51:46.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.177][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-05-30 01:51:46.178][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-05-30 01:51:46.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.183][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:51:46.185][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-05-30 01:51:46.189][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-05-30 01:51:46.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.194][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-05-30 01:51:46.196][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-05-30 01:51:46.197][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-05-30 01:51:46.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.203][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-05-30 01:51:46.205][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.207][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-05-30 01:51:46.208][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.210][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:46.211][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.213][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.214][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.215][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.217][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:51:46.218][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:46.220][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.221][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-05-30 01:51:46.223][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:46.224][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.225][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.227][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:46.227][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:46.227][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:46.227][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:51:46.227][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:51:46.228][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:46.230][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.232][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:46.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.235][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.238][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.239][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:46.241][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:46.242][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.243][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.245][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-05-30 01:51:46.248][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.249][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:51:46.251][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:46.253][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.255][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.256][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.258][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.260][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:51:46.261][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:46.263][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.264][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-05-30 01:51:46.265][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:46.267][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.268][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.270][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:46.270][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:46.270][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:46.270][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:51:46.270][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:51:46.271][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:46.273][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.274][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.275][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:46.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.281][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.282][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:46.283][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:46.285][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.286][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.288][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-05-30 01:51:46.290][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.292][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-05-30 01:51:46.293][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.295][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:46.296][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.298][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.299][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.301][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.302][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:51:46.303][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:46.305][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.306][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-05-30 01:51:46.308][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:46.309][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.311][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.312][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.314][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:46.315][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.318][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:46.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.322][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.323][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.325][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:46.326][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:46.327][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.329][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.331][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-05-30 01:51:46.333][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.335][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:51:46.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.338][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:46.339][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.340][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.342][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.343][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.345][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:51:46.346][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:46.348][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.349][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-05-30 01:51:46.350][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:46.352][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.353][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.355][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.356][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:46.358][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.360][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:46.362][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.364][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.366][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.367][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:46.375][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:46.377][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.379][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:46.381][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:46.382][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.499][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-05-30 01:51:46.501][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-05-30 01:51:46.504][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-05-30 01:51:46.506][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-05-30 01:51:46.508][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:51:46.510][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-05-30 01:51:46.512][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-05-30 01:51:46.514][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-05-30 01:51:46.516][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-05-30 01:51:46.518][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-05-30 01:51:46.520][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:51:46.522][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-05-30 01:51:46.524][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-05-30 01:51:46.527][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-05-30 01:51:46.529][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-05-30 01:51:46.531][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-05-30 01:51:46.533][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-05-30 01:51:46.535][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-05-30 01:51:46.537][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:51:46.539][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-05-30 01:51:46.541][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-05-30 01:51:46.543][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-05-30 01:51:46.545][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-05-30 01:51:46.548][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-05-30 01:51:46.550][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-05-30 01:51:46.552][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-05-30 01:51:46.554][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-05-30 01:51:46.556][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-05-30 01:51:46.558][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-05-30 01:51:46.560][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-05-30 01:51:46.563][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-05-30 01:51:46.565][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-05-30 01:51:46.567][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-05-30 01:51:46.569][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-05-30 01:51:46.571][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-05-30 01:51:46.573][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-05-30 01:51:46.575][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-05-30 01:51:46.578][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-05-30 01:51:46.580][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-05-30 01:51:46.582][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-05-30 01:51:46.584][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-05-30 01:51:46.586][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-05-30 01:51:46.588][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-05-30 01:51:46.590][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-05-30 01:51:46.593][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-05-30 01:51:46.595][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-05-30 01:51:46.597][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-05-30 01:51:46.599][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-05-30 01:51:46.601][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-05-30 01:51:46.603][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-05-30 01:51:46.605][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-05-30 01:51:46.607][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-05-30 01:51:46.610][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-05-30 01:51:46.612][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-05-30 01:51:46.614][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-05-30 01:51:46.616][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-05-30 01:51:46.618][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-05-30 01:51:46.620][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-05-30 01:51:46.629][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-05-30 01:51:46.632][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-05-30 01:51:46.634][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-05-30 01:51:46.636][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-05-30 01:51:46.638][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-05-30 01:51:46.640][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-05-30 01:51:46.642][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-05-30 01:51:46.644][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-05-30 01:51:46.646][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:51:46.648][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:51:46.651][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-05-30 01:51:46.653][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-05-30 01:51:46.655][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-05-30 01:51:46.657][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-05-30 01:51:46.659][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-05-30 01:51:46.661][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-05-30 01:51:46.664][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-05-30 01:51:46.666][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-05-30 01:51:46.668][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-05-30 01:51:46.670][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-05-30 01:51:46.672][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-05-30 01:51:46.674][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-05-30 01:51:46.676][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-05-30 01:51:46.679][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-05-30 01:51:46.681][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-05-30 01:51:46.683][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-05-30 01:51:46.685][initialize] This is biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:51:46.687][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:46.688][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.690][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:46.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:46.855][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-05-30 01:51:46.857][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-05-30 01:51:46.860][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.862][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.863][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.865][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:46.867][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.868][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.870][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.872][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-05-30 01:51:46.873][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-05-30 01:51:46.875][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:46.876][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.878][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-05-30 01:51:46.888][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-05-30 01:51:46.889][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-05-30 01:51:46.891][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:46.893][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:46.893][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:46.893][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:46.894][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-05-30 01:51:46.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.899][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:46.901][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:46.902][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:46.904][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:46.905][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-05-30 01:51:46.905][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-05-30 01:51:46.907][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:46.908][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:46.910][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:46.911][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-05-30 01:51:46.911][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-05-30 01:51:46.913][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:51:46.916][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:51:46.918][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-05-30 01:51:46.920][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:51:46.922][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:51:46.925][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:51:46.929][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-05-30 01:51:46.931][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-05-30 01:51:46.933][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-05-30 01:51:46.935][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-05-30 01:51:46.936][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:51:46.938][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:51:46.940][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-05-30 01:51:46.941][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-05-30 01:51:46.943][biodb::testThat]
biodb.INFO [2023-05-30 01:51:46.945][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2023-05-30 01:51:46.946][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:46.947][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:46.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-05-30 01:51:46.957][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:46.959][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-05-30 01:51:46.961][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:46.963][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-05-30 01:51:46.967][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:46.972][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:46.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-05-30 01:51:46.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:46.978][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2023-05-30 01:51:46.984][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-05-30 01:51:46.986][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-05-30 01:51:46.987][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-05-30 01:51:46.988][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-05-30 01:51:46.990][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:46.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:46.992][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:46.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:46.995][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:46.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-05-30 01:51:47.001][biodb::testContext]
biodb.INFO [2023-05-30 01:51:47.003][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:51:47.004][biodb::testContext] Test context - Non regression tests
biodb.INFO [2023-05-30 01:51:47.005][biodb::testContext] ********************************************************************************
biodb.INFO [2023-05-30 01:51:47.007][biodb::testContext]
biodb.INFO [2023-05-30 01:51:47.013][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:51:47.015][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-05-30 01:51:47.020][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:47.022][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-05-30 01:51:47.023][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-05-30 01:51:47.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.028][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-05-30 01:51:47.030][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-05-30 01:51:47.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.035][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-05-30 01:51:47.036][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-05-30 01:51:47.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.042][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-05-30 01:51:47.043][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-05-30 01:51:47.045][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-05-30 01:51:47.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.050][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-05-30 01:51:47.051][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-05-30 01:51:47.053][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-05-30 01:51:47.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.058][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-05-30 01:51:47.059][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-05-30 01:51:47.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.097][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-05-30 01:51:47.099][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-05-30 01:51:47.100][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-05-30 01:51:47.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.105][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-05-30 01:51:47.106][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-05-30 01:51:47.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.111][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-05-30 01:51:47.113][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-05-30 01:51:47.114][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-05-30 01:51:47.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.119][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:51:47.121][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-05-30 01:51:47.122][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-05-30 01:51:47.124][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-05-30 01:51:47.125][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-05-30 01:51:47.126][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-05-30 01:51:47.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.132][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-05-30 01:51:47.133][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-05-30 01:51:47.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.138][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-05-30 01:51:47.140][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-05-30 01:51:47.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.145][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-05-30 01:51:47.146][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-05-30 01:51:47.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.151][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-05-30 01:51:47.153][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-05-30 01:51:47.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.158][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-05-30 01:51:47.159][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-05-30 01:51:47.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.164][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-05-30 01:51:47.173][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-05-30 01:51:47.178][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-05-30 01:51:47.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.183][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-05-30 01:51:47.185][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-05-30 01:51:47.186][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-05-30 01:51:47.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.192][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-05-30 01:51:47.194][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.196][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-05-30 01:51:47.197][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.198][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:47.200][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.201][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.203][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.204][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.206][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:51:47.207][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:47.209][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.210][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-05-30 01:51:47.211][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:47.213][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.214][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.216][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:47.216][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:47.216][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:47.216][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:51:47.216][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:51:47.217][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:47.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.221][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:47.223][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.224][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.226][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.227][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.228][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:47.230][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:47.231][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.233][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.234][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-05-30 01:51:47.237][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.238][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:51:47.240][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.241][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:47.243][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.244][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.246][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.248][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:51:47.250][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:47.251][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.253][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-05-30 01:51:47.254][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:47.256][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.257][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.259][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:47.259][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:47.259][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:47.259][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-05-30 01:51:47.259][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-05-30 01:51:47.260][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:47.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.264][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:47.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.269][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.270][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.272][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:47.273][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:47.274][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.276][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.277][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-05-30 01:51:47.280][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.281][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-05-30 01:51:47.283][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.284][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:47.286][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.287][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.289][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.290][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.291][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-05-30 01:51:47.293][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:47.294][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.296][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-05-30 01:51:47.297][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:47.299][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.300][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.302][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.303][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:47.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.306][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.307][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:47.309][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.311][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.313][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.314][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:47.315][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:47.317][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.318][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.320][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-05-30 01:51:47.322][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.324][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-05-30 01:51:47.325][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.327][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:47.328][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.331][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.334][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-05-30 01:51:47.335][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:47.337][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.338][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-05-30 01:51:47.340][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:47.341][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.343][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.344][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.345][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-05-30 01:51:47.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.350][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:47.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.352][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.354][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.355][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.356][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:47.358][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:47.359][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.361][self$setPropertyValue]
biodb.DEBUG[2023-05-30 01:51:47.362][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:47.364][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.485][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-05-30 01:51:47.487][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-05-30 01:51:47.489][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-05-30 01:51:47.491][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-05-30 01:51:47.493][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:51:47.495][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-05-30 01:51:47.497][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-05-30 01:51:47.499][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-05-30 01:51:47.501][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-05-30 01:51:47.503][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-05-30 01:51:47.505][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:51:47.507][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-05-30 01:51:47.509][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-05-30 01:51:47.511][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-05-30 01:51:47.513][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-05-30 01:51:47.515][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-05-30 01:51:47.517][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-05-30 01:51:47.519][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-05-30 01:51:47.521][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:51:47.523][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-05-30 01:51:47.525][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-05-30 01:51:47.527][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-05-30 01:51:47.529][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-05-30 01:51:47.531][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-05-30 01:51:47.533][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-05-30 01:51:47.535][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-05-30 01:51:47.537][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-05-30 01:51:47.539][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-05-30 01:51:47.541][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-05-30 01:51:47.543][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-05-30 01:51:47.545][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-05-30 01:51:47.547][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-05-30 01:51:47.549][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-05-30 01:51:47.551][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-05-30 01:51:47.553][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-05-30 01:51:47.555][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-05-30 01:51:47.557][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-05-30 01:51:47.559][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-05-30 01:51:47.561][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-05-30 01:51:47.563][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-05-30 01:51:47.565][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-05-30 01:51:47.567][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-05-30 01:51:47.569][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-05-30 01:51:47.571][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-05-30 01:51:47.573][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-05-30 01:51:47.575][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-05-30 01:51:47.577][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-05-30 01:51:47.579][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-05-30 01:51:47.581][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-05-30 01:51:47.583][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-05-30 01:51:47.585][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-05-30 01:51:47.587][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-05-30 01:51:47.589][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-05-30 01:51:47.591][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-05-30 01:51:47.593][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-05-30 01:51:47.595][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-05-30 01:51:47.597][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-05-30 01:51:47.599][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-05-30 01:51:47.602][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-05-30 01:51:47.604][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-05-30 01:51:47.606][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-05-30 01:51:47.608][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-05-30 01:51:47.610][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-05-30 01:51:47.612][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-05-30 01:51:47.614][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-05-30 01:51:47.616][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-05-30 01:51:47.618][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:51:47.620][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:51:47.622][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-05-30 01:51:47.624][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-05-30 01:51:47.626][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-05-30 01:51:47.628][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-05-30 01:51:47.630][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-05-30 01:51:47.632][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-05-30 01:51:47.634][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-05-30 01:51:47.636][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-05-30 01:51:47.638][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-05-30 01:51:47.640][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-05-30 01:51:47.642][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-05-30 01:51:47.644][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-05-30 01:51:47.646][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-05-30 01:51:47.648][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-05-30 01:51:47.650][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-05-30 01:51:47.660][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-05-30 01:51:47.662][initialize] This is biodb version 1.9.0.
biodb.DEBUG[2023-05-30 01:51:47.663][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-05-30 01:51:47.665][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.667][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-05-30 01:51:47.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-05-30 01:51:47.823][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.3.0/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-05-30 01:51:47.825][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-05-30 01:51:47.828][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.829][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.832][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-05-30 01:51:47.833][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.835][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.836][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.838][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-05-30 01:51:47.839][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-05-30 01:51:47.841][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-05-30 01:51:47.842][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.844][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-05-30 01:51:47.845][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-05-30 01:51:47.847][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-05-30 01:51:47.848][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-05-30 01:51:47.850][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-05-30 01:51:47.850][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-05-30 01:51:47.850][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-05-30 01:51:47.851][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-05-30 01:51:47.852][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.854][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.855][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-05-30 01:51:47.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-05-30 01:51:47.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-05-30 01:51:47.859][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-05-30 01:51:47.861][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-05-30 01:51:47.861][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-05-30 01:51:47.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-05-30 01:51:47.863][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-05-30 01:51:47.865][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-05-30 01:51:47.866][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-05-30 01:51:47.866][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-05-30 01:51:47.868][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-05-30 01:51:47.870][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-05-30 01:51:47.873][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-05-30 01:51:47.876][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-05-30 01:51:47.878][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-05-30 01:51:47.880][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-05-30 01:51:47.885][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-05-30 01:51:47.886][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-05-30 01:51:47.888][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-05-30 01:51:47.890][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-05-30 01:51:47.899][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:51:47.901][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-05-30 01:51:47.903][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-05-30 01:51:47.904][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-05-30 01:51:47.906][biodb::testThat]
biodb.INFO [2023-05-30 01:51:47.907][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2023-05-30 01:51:47.909][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-05-30 01:51:47.910][biodb::testThat]
biodb.DEBUG[2023-05-30 01:51:47.915][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-05-30 01:51:47.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:47.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-05-30 01:51:47.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:47.925][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-05-30 01:51:47.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-05-30 01:51:47.934][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-05-30 01:51:47.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-05-30 01:51:47.937][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:47.939][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2023-05-30 01:51:47.944][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2023-05-30 01:51:47.945][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-05-30 01:51:47.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2023-05-30 01:51:47.949][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-05-30 01:51:47.952][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2023-05-30 01:51:47.954][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-05-30 01:51:47.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-05-30 01:51:47.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-05-30 01:51:47.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-05-30 01:51:47.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:47.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:47.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:47.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:47.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:47.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-05-30 01:51:47.999][ef$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.003][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.015][ef$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:48.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:48.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.019][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-05-30 01:51:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-05-30 01:51:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.030][ef$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:48.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:48.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.035][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-05-30 01:51:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-05-30 01:51:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-05-30 01:51:48.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-05-30 01:51:48.049][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.050][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-05-30 01:51:48.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-05-30 01:51:48.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.056][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:48.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.062][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-05-30 01:51:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.074][ef$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:48.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:48.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.079][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-05-30 01:51:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-05-30 01:51:48.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:48.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:48.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.095][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-05-30 01:51:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.107][ef$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:48.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:48.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.111][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-05-30 01:51:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-05-30 01:51:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.123][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:48.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:48.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.127][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-05-30 01:51:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-05-30 01:51:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:48.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:48.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.143][ef$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-05-30 01:51:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-05-30 01:51:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:48.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-05-30 01:51:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-05-30 01:51:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-05-30 01:51:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-05-30 01:51:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-05-30 01:51:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-05-30 01:51:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-05-30 01:51:48.225][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2023-05-30 01:51:48.227][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-05-30 01:51:48.229][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-05-30 01:51:48.230][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-05-30 01:51:48.231][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-05-30 01:51:48.233][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-05-30 01:51:48.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-05-30 01:51:48.235][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-05-30 01:51:48.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-05-30 01:51:48.238][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-05-30 01:51:48.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 340 ]
> 
> proc.time()
   user  system elapsed 
 24.259   0.605  55.497

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

nameusersystemelapsed
ChebiConn1.5760.0524.188
ChebiEntry0.2700.0130.283