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This page was generated on 2023-05-31 05:44:33 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for debrowser on kunpeng1


To the developers/maintainers of the debrowser package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/debrowser.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 495/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
debrowser 1.29.0  (landing page)
Alper Kucukural
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/debrowser
git_branch: devel
git_last_commit: 574dbf2
git_last_commit_date: 2023-04-25 14:45:24 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: debrowser
Version: 1.29.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data debrowser
StartedAt: 2023-05-29 16:41:33 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 16:42:58 -0000 (Mon, 29 May 2023)
EllapsedTime: 85.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data debrowser
###
##############################################################################
##############################################################################


* checking for file ‘debrowser/DESCRIPTION’ ... OK
* preparing ‘debrowser’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEBrowser.Rmd’ using rmarkdown
Could not fetch http://bioinfo.umassmed.edu/pub/debrowser/debrowser_pics2/data_load.png
HttpExceptionRequest Request {
  host                 = "bioinfo.umassmed.edu"
  port                 = 80
  secure               = False
  requestHeaders       = []
  path                 = "/pub/debrowser/debrowser_pics2/data_load.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (InternalException (HandshakeFailed (Error_Protocol ("certificate has expired",True,CertificateExpired))))
Error: processing vignette 'DEBrowser.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘DEBrowser.Rmd’

SUMMARY: processing the following file failed:
  ‘DEBrowser.Rmd’

Error: Vignette re-building failed.
Execution halted