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This page was generated on 2023-05-31 05:44:33 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ensembldb on kunpeng1


To the developers/maintainers of the ensembldb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ensembldb.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 626/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ensembldb 2.25.0  (landing page)
Johannes Rainer
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/ensembldb
git_branch: devel
git_last_commit: 62012ae
git_last_commit_date: 2023-04-25 14:38:28 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: ensembldb
Version: 2.25.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data ensembldb
StartedAt: 2023-05-29 17:20:16 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 17:22:23 -0000 (Mon, 29 May 2023)
EllapsedTime: 127.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data ensembldb
###
##############################################################################
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* checking for file ‘ensembldb/DESCRIPTION’ ... OK
* preparing ‘ensembldb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MySQL-backend.Rmd’ using rmarkdown
--- finished re-building ‘MySQL-backend.Rmd’

--- re-building ‘coordinate-mapping-use-cases.Rmd’ using rmarkdown
--- finished re-building ‘coordinate-mapping-use-cases.Rmd’

--- re-building ‘coordinate-mapping.Rmd’ using rmarkdown

Quitting from lines 616-619 [pkp2-variant-pos-validate] (coordinate-mapping.Rmd)
Error: processing vignette 'coordinate-mapping.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.NCBI.GRCh38'
--- failed re-building ‘coordinate-mapping.Rmd’

--- re-building ‘ensembldb.Rmd’ using rmarkdown

Quitting from lines 537-556 [extractTranscriptSeqs-BSGenome] (ensembldb.Rmd)
Error: processing vignette 'ensembldb.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.NCBI.GRCh38'
--- failed re-building ‘ensembldb.Rmd’

--- re-building ‘proteins.Rmd’ using rmarkdown
--- finished re-building ‘proteins.Rmd’

SUMMARY: processing the following files failed:
  ‘coordinate-mapping.Rmd’ ‘ensembldb.Rmd’

Error: Vignette re-building failed.
Execution halted