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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data farms
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* checking for file ‘farms/DESCRIPTION’ ... OK
* preparing ‘farms’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘farms.Rnw’ using Sweave
Loading required package: affy
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: MASS
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Citation: S. Hochreiter et al.,
A new summarization method for affymetrix probe level data,
Bioinformatics, 22, 8, 943-949, 2006

Citation: W. Talloen et al.,
I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data,
Bioinformatics, 23, 21, 2897-2902, 2007
BibTex: enter 'toBibtex(citation("farms"))'

Homepage: http://www.bioinf.jku.at/software/farms/farms.html

FARMS Package Version 1.53.0


Changes in FARMS:
For all changes previous to 1.3.0, see the farms vignette.
Version 1.3.0: Added I/NI-calls for filtering
               Adjusted Hyperparameters for alternative CDFs,
               probes set standardized, weighted mean
               Works now with R >= 2.8 and Bioconductor 2.3,
               Changed termination criterion, initialization values,
               factors and loadings scaled, added argument robust
               Update for R-2.11
               Updated I/NI-Call for Laplace-FARMS version,
               Maximum likelihood correlation structure given
               non-negative constraints
Version 1.4.0: Default centering changed to median
Version 1.8.x: Suppression of spurious correlation (Laplace-FARMS)


Error: processing vignette 'farms.Rnw' failed with diagnostics:
 chunk 2 
Error in library(affydata) : there is no package called ‘affydata’

--- failed re-building ‘farms.Rnw’

SUMMARY: processing the following file failed:
  ‘farms.Rnw’

Error: Vignette re-building failed.
Execution halted