Build/check report for BioC 3.18 - CHECK results for graper on kunpeng1

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng1	Linux (Ubuntu 22.04.1 LTS)	aarch64	4.3.0 (2023-04-21) -- "Already Tomorrow"	4219
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.17.1

Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings graper_1.17.1.tar.gz

StartedAt: 2023-05-30 09:03:32 -0000 (Tue, 30 May 2023)

EndedAt: 2023-05-30 09:05:21 -0000 (Tue, 30 May 2023)

EllapsedTime: 109.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings graper_1.17.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/graper.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.17.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘example_linear.Rmd’ using ‘UTF-8’... OK
  ‘example_logistic.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.3.0/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.3.0/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -lblas -lgfortran -lm -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-868.283
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-579.61
ELB improved by 288.673

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.026
ELB improved by 61.5842

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.283
ELB improved by 41.7421

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.049
ELB improved by 18.2345

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.309
ELB improved by 7.74033

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.884
ELB improved by 5.42508

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.654
ELB improved by 5.22985

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.062
ELB improved by 5.59138

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.936
ELB improved by 6.12609

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.502
ELB improved by 6.43391

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.51
ELB improved by 5.99202

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.824
ELB improved by 4.68653

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.71
ELB improved by 3.11421

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.794
ELB improved by 1.91593

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.579
ELB improved by 1.21486

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.761
ELB improved by 0.817641

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.194
ELB improved by 0.567172

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.779
ELB improved by 0.414765

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.449
ELB improved by 0.330336

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.166
ELB improved by 0.282431

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.917
ELB improved by 0.249458

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.696
ELB improved by 0.221433

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.498
ELB improved by 0.197515

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.318
ELB improved by 0.179657

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.151
ELB improved by 0.167815

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.99
ELB improved by 0.160262

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.835
ELB improved by 0.15525

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.683
ELB improved by 0.151587

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.535
ELB improved by 0.148543

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.389
ELB improved by 0.145656

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.247
ELB improved by 0.142626

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.107
ELB improved by 0.139254

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.972
ELB improved by 0.135429

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.841
ELB improved by 0.131107

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.714
ELB improved by 0.1263

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.593
ELB improved by 0.121067

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.478
ELB improved by 0.115495

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.368
ELB improved by 0.109689

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.264
ELB improved by 0.103757

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.167
ELB improved by 0.0978028

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.075
ELB improved by 0.091918

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.989
ELB improved by 0.0861787

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.908
ELB improved by 0.0806443

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.833
ELB improved by 0.0753575

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.762
ELB improved by 0.0703461

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.697
ELB improved by 0.0656249

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.635
ELB improved by 0.0611988

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.578
ELB improved by 0.0570645

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.525
ELB improved by 0.053213

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.476
ELB improved by 0.0496317

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.429
ELB improved by 0.0463055

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.386
ELB improved by 0.0432184

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.346
ELB improved by 0.040354

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.308
ELB improved by 0.0376963

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.273
ELB improved by 0.03523

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.24
ELB improved by 0.0329406

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.209
ELB improved by 0.0308146

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.18
ELB improved by 0.0288398

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.153
ELB improved by 0.0270046

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.128
ELB improved by 0.0252987

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.104
ELB improved by 0.0237123

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.082
ELB improved by 0.0222366

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.061
ELB improved by 0.0208636

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.041
ELB improved by 0.0195857

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.023
ELB improved by 0.018396

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.006
ELB improved by 0.0172883

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.989
ELB improved by 0.0162565

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.974
ELB improved by 0.0152954

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.96
ELB improved by 0.0143998

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.946
ELB improved by 0.0135651

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.933
ELB improved by 0.0127871

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.921
ELB improved by 0.0120616

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.91
ELB improved by 0.0113851

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.899
ELB improved by 0.010754

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.889
ELB improved by 0.0101651

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.879
ELB improved by 0.00961562

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-838.89
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.387
ELB improved by 256.503

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.849
ELB improved by 61.5383

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.66
ELB improved by 42.189

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.086
ELB improved by 19.5733

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.506
ELB improved by 8.58017

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.377
ELB improved by 5.12944

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.738
ELB improved by 4.63825

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.992
ELB improved by 4.74679

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.11
ELB improved by 4.88144

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.285
ELB improved by 4.82479

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.829
ELB improved by 4.45676

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.984
ELB improved by 3.84479

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.814
ELB improved by 3.17022

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.29
ELB improved by 2.52403

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.368
ELB improved by 1.92158

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.96
ELB improved by 1.40796

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.934
ELB improved by 1.02616

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.164
ELB improved by 0.769538

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.562
ELB improved by 0.602241

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.072
ELB improved by 0.489815

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.662
ELB improved by 0.409976

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.311
ELB improved by 0.351278

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.003
ELB improved by 0.308198

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.726
ELB improved by 0.277311

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.47
ELB improved by 0.255853

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.228
ELB improved by 0.241584

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.995
ELB improved by 0.232848

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.767
ELB improved by 0.228484

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.539
ELB improved by 0.227679

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.309
ELB improved by 0.229839

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.075
ELB improved by 0.234495

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.833
ELB improved by 0.241246

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.584
ELB improved by 0.249726

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.324
ELB improved by 0.259578

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.054
ELB improved by 0.270445

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.772
ELB improved by 0.281965

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.478
ELB improved by 0.293793

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.172
ELB improved by 0.30564

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.855
ELB improved by 0.31736

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.526
ELB improved by 0.329082

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.185
ELB improved by 0.341387

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.829
ELB improved by 0.35541

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.457
ELB improved by 0.372331

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.066
ELB improved by 0.39063

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.666
ELB improved by 0.400045

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.283
ELB improved by 0.382634

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.948
ELB improved by 0.335725

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.668
ELB improved by 0.280095

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.436
ELB improved by 0.23193

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.242
ELB improved by 0.193516

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.079
ELB improved by 0.162923

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.941
ELB improved by 0.138522

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.822
ELB improved by 0.119225

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.717
ELB improved by 0.104261

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.624
ELB improved by 0.093095

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.539
ELB improved by 0.0853284

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.458
ELB improved by 0.0805274

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.38
ELB improved by 0.0780144

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.304
ELB improved by 0.0767086

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.228
ELB improved by 0.0751569

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.157
ELB improved by 0.0719

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.09
ELB improved by 0.0661428

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.032
ELB improved by 0.0582737

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.982
ELB improved by 0.0496711

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.941
ELB improved by 0.0418955

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.905
ELB improved by 0.0359906

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.872
ELB improved by 0.032325

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.841
ELB improved by 0.0307666

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.811
ELB improved by 0.0308236

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.779
ELB improved by 0.0316271

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.747
ELB improved by 0.0319386

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.717
ELB improved by 0.0305184

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.69
ELB improved by 0.0268623

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.668
ELB improved by 0.0216259

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.652
ELB improved by 0.0161296

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.64
ELB improved by 0.01145

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.633
ELB improved by 0.00799396

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-835.302
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-609.128
ELB improved by 226.173

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-551.625
ELB improved by 57.5029

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.637
ELB improved by 50.9886

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.874
ELB improved by 29.7627

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.692
ELB improved by 12.1818

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.307
ELB improved by 6.38483

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.133
ELB improved by 5.17395

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.927
ELB improved by 5.20642

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.232
ELB improved by 5.69513

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.98
ELB improved by 6.25176

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.71
ELB improved by 6.26969

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.374
ELB improved by 5.33674

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.518
ELB improved by 3.85566

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.02
ELB improved by 2.49825

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.462
ELB improved by 1.55736

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.452
ELB improved by 1.01021

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.743
ELB improved by 0.708693

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.208
ELB improved by 0.535436

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.78
ELB improved by 0.428463

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.422
ELB improved by 0.357745

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.114
ELB improved by 0.308222

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.842
ELB improved by 0.271858

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.598
ELB improved by 0.24412

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.375
ELB improved by 0.222341

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.17
ELB improved by 0.204904

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.979
ELB improved by 0.190852

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.8
ELB improved by 0.179699

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.628
ELB improved by 0.171356

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.462
ELB improved by 0.166037

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.298
ELB improved by 0.163943

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.134
ELB improved by 0.164381

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.97
ELB improved by 0.164548

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.809
ELB improved by 0.160117

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.66
ELB improved by 0.149219

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.525
ELB improved by 0.134795

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.404
ELB improved by 0.121085

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.294
ELB improved by 0.110046

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.193
ELB improved by 0.101572

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.098
ELB improved by 0.0949243

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.008
ELB improved by 0.0894713

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.923
ELB improved by 0.0848219

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.843
ELB improved by 0.0807595

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.766
ELB improved by 0.0771647

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.692
ELB improved by 0.0739646

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.62
ELB improved by 0.0711069

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.552
ELB improved by 0.0685479

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.486
ELB improved by 0.0662482

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.422
ELB improved by 0.0641708

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.359
ELB improved by 0.0622808

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.299
ELB improved by 0.060546

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.24
ELB improved by 0.0589364

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.182
ELB improved by 0.0574249

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.126
ELB improved by 0.0559872

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.072
ELB improved by 0.0546017

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.018
ELB improved by 0.0532497

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.967
ELB improved by 0.051915

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.916
ELB improved by 0.0505846

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.867
ELB improved by 0.0492478

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.819
ELB improved by 0.0478966

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.772
ELB improved by 0.0465255

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.727
ELB improved by 0.0451312

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.683
ELB improved by 0.0437131

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.641
ELB improved by 0.0422722

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.6
ELB improved by 0.040812

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.561
ELB improved by 0.0393374

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.523
ELB improved by 0.0378554

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.487
ELB improved by 0.0363744

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.452
ELB improved by 0.0349044

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.418
ELB improved by 0.0334574

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.386
ELB improved by 0.0320466

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.356
ELB improved by 0.030688

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.326
ELB improved by 0.0294002

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.298
ELB improved by 0.0282056

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.271
ELB improved by 0.0271325

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.245
ELB improved by 0.0262177

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.219
ELB improved by 0.02551

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.194
ELB improved by 0.0250767

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.169
ELB improved by 0.025011

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.144
ELB improved by 0.0254429

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.117
ELB improved by 0.0265509

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.089
ELB improved by 0.0285721

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.057
ELB improved by 0.0318092

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.02
ELB improved by 0.0366391

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.977
ELB improved by 0.0435631

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.923
ELB improved by 0.0533799

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.856
ELB improved by 0.0674307

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.769
ELB improved by 0.0871051

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.658
ELB improved by 0.110273

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.534
ELB improved by 0.124741

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.419
ELB improved by 0.114189

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.336
ELB improved by 0.0830325

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.284
ELB improved by 0.0522853

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.252
ELB improved by 0.0320732

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.231
ELB improved by 0.0207473

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.217
ELB improved by 0.0145931

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.206
ELB improved by 0.0111635

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.196
ELB improved by 0.00917593

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-847.917
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-576.979
ELB improved by 270.938

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.306
ELB improved by 58.6726

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.14
ELB improved by 40.1664

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.039
ELB improved by 20.1009

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.231
ELB improved by 9.80811

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.851
ELB improved by 6.37976

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.151
ELB improved by 5.70012

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.365
ELB improved by 5.78635

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.711
ELB improved by 5.65364

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.839
ELB improved by 4.87175

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.123
ELB improved by 3.71609

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.459
ELB improved by 2.66391

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.615
ELB improved by 1.84449

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.328
ELB improved by 1.28693

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.376
ELB improved by 0.951656

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.621
ELB improved by 0.755508

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.985
ELB improved by 0.63625

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.426
ELB improved by 0.558346

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.923
ELB improved by 0.50289

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.464
ELB improved by 0.459789

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.04
ELB improved by 0.423597

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.648
ELB improved by 0.391479

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.286
ELB improved by 0.362119

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.951
ELB improved by 0.335047

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.641
ELB improved by 0.310208

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.353
ELB improved by 0.287687

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.086
ELB improved by 0.267558

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.836
ELB improved by 0.249814

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.602
ELB improved by 0.234367

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.381
ELB improved by 0.221077

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.171
ELB improved by 0.209798

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.97
ELB improved by 0.200414

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.778
ELB improved by 0.192887

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.59
ELB improved by 0.187308

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.406
ELB improved by 0.183988

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.223
ELB improved by 0.183614

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.035
ELB improved by 0.187517

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.837
ELB improved by 0.198008

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.619
ELB improved by 0.218153

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.37
ELB improved by 0.248609

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.091
ELB improved by 0.279183

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.802
ELB improved by 0.288748

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.53
ELB improved by 0.272327

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.282
ELB improved by 0.24823

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.053
ELB improved by 0.22916

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.837
ELB improved by 0.215955

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.63
ELB improved by 0.207018

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.427
ELB improved by 0.202656

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.221
ELB improved by 0.20571

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399
ELB improved by 0.221302

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.746
ELB improved by 0.25439

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.444
ELB improved by 0.301511

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.098
ELB improved by 0.346538

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.728
ELB improved by 0.369589

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.389
ELB improved by 0.339482

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.116
ELB improved by 0.272087

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.879
ELB improved by 0.237205

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.62
ELB improved by 0.258884

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.286
ELB improved by 0.334522

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.825
ELB improved by 0.460875

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.239
ELB improved by 0.585627

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.631
ELB improved by 0.608709

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.055
ELB improved by 0.575952

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.441
ELB improved by 0.613609

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.735
ELB improved by 0.705584

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.061
ELB improved by 0.674262

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.521
ELB improved by 0.539957

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.103
ELB improved by 0.418227

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.803
ELB improved by 0.300407

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.606
ELB improved by 0.196398

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.481
ELB improved by 0.12531

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.398
ELB improved by 0.0828146

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.34
ELB improved by 0.0579059

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.297
ELB improved by 0.0427949

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.264
ELB improved by 0.0331476

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.238
ELB improved by 0.0266628

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.215
ELB improved by 0.0220922

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.197
ELB improved by 0.0187305

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.181
ELB improved by 0.0161633

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.166
ELB improved by 0.0141385

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.154
ELB improved by 0.0124983

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.143
ELB improved by 0.0111406

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.133
ELB improved by 0.00999753

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.884   0.185   3.051

name	user	system	elapsed
coef.graper	0.090	0.004	0.094
getPIPs	0.076	0.012	0.088
graper	0.119	0.020	0.139
makeExampleData	0.014	0.000	0.014
makeExampleDataWithUnequalGroups	0.028	0.000	0.028
plotELBO	0.300	0.012	0.312
plotGroupPenalties	1.114	0.056	1.170
plotPosterior	0.731	0.032	0.763
predict.graper	3.103	0.048	3.155
print.graper	0.084	0.004	0.087

CHECK results for graper on kunpeng1

Summary

Command output

Installation output

Tests output

Example timings