| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-31 05:44:38 -0000 (Wed, 31 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4219 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the mirTarRnaSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1232/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mirTarRnaSeq 1.9.0 (landing page) Mercedeh Movassagh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: mirTarRnaSeq |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings mirTarRnaSeq_1.9.0.tar.gz |
| StartedAt: 2023-05-30 12:30:44 -0000 (Tue, 30 May 2023) |
| EndedAt: 2023-05-30 12:36:04 -0000 (Tue, 30 May 2023) |
| EllapsedTime: 319.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mirTarRnaSeq.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings mirTarRnaSeq_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/mirTarRnaSeq.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.
mirTarRnaSeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL mirTarRnaSeq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘mirTarRnaSeq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirTarRnaSeq)
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
| name | user | system | elapsed | |
| combiner | 0.009 | 0.000 | 0.009 | |
| corMirnaRna | 0.117 | 0.008 | 0.126 | |
| corMirnaRnaMiranda | 0.212 | 0.012 | 0.224 | |
| downloadMirandaFile | 0 | 0 | 0 | |
| drawCorPlot | 0 | 0 | 0 | |
| drawInterPlots | 0.041 | 0.008 | 0.049 | |
| fdrSig | 0.720 | 0.020 | 0.741 | |
| finInterResult | 0.001 | 0.000 | 0.001 | |
| geneVari | 0.001 | 0.000 | 0.000 | |
| getInputSpecies | 0.363 | 0.024 | 0.388 | |
| glm_gaussian | 0.000 | 0.000 | 0.001 | |
| glm_multi | 0.000 | 0.000 | 0.001 | |
| glm_nb | 0 | 0 | 0 | |
| glm_poisson | 0 | 0 | 0 | |
| glm_zeroinfl | 0.001 | 0.000 | 0.001 | |
| glm_zeroinfl_negbin | 0.001 | 0.000 | 0.001 | |
| glm_zeroinfl_poisson | 0 | 0 | 0 | |
| importMirandaFile | 0 | 0 | 0 | |
| makeFormulaRightSide | 0 | 0 | 0 | |
| miRanComp | 0.035 | 0.012 | 0.047 | |
| miRandaIntersect | 0.025 | 0.000 | 0.026 | |
| mirRnaDensityCor | 0.041 | 0.004 | 0.045 | |
| mirRnaDensityInter | 0 | 0 | 0 | |
| mirRnaHeatmap | 0.949 | 0.020 | 0.970 | |
| mirRnaHeatmapDiff | 0.109 | 0.000 | 0.109 | |
| mirandaIntersectInter | 0.019 | 0.000 | 0.018 | |
| modelAIC | 0.08 | 0.00 | 0.08 | |
| modelCoefficients | 0.000 | 0.001 | 0.001 | |
| modelData | 0 | 0 | 0 | |
| modelModelName | 0 | 0 | 0 | |
| modelModelPvalue | 0 | 0 | 0 | |
| modelTermPvalues | 0.001 | 0.000 | 0.001 | |
| modelsFilter | 0 | 0 | 0 | |
| one2OneRnaMiRNA | 0 | 0 | 0 | |
| plotFit | 0.005 | 0.003 | 0.008 | |
| plotResiduals | 0.009 | 0.001 | 0.009 | |
| plotTerms | 0.004 | 0.000 | 0.004 | |
| runAllMirnaModels | 0.690 | 0.011 | 0.703 | |
| runModels | 0.693 | 0.009 | 0.701 | |
| sampCorRnaMirna | 1.124 | 0.056 | 1.181 | |
| threshSig | 0 | 0 | 0 | |
| threshSigInter | 0.000 | 0.002 | 0.002 | |
| twoTimePoint | 0 | 0 | 0 | |
| twoTimePointSamp | 0 | 0 | 0 | |
| tzTrans | 0.009 | 0.000 | 0.008 | |