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This page was generated on 2023-05-31 05:44:38 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for msPurity on kunpeng1


To the developers/maintainers of the msPurity package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/msPurity.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1292/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msPurity 1.27.0  (landing page)
Thomas N. Lawson
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/msPurity
git_branch: devel
git_last_commit: 88ddbf8
git_last_commit_date: 2023-04-25 14:47:11 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: msPurity
Version: 1.27.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity
StartedAt: 2023-05-29 19:56:31 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 19:57:14 -0000 (Mon, 29 May 2023)
EllapsedTime: 43.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity
###
##############################################################################
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* checking for file ‘msPurity/DESCRIPTION’ ... OK
* preparing ‘msPurity’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown

Quitting from lines 38-52 [unnamed-chunk-1] (msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd)
Error: processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics:
No NetCDF/mzXML/mzML files were found.

--- failed re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’

--- re-building ‘msPurity-spectral-database-vignette.Rmd’ using rmarkdown
--- finished re-building ‘msPurity-spectral-database-vignette.Rmd’

--- re-building ‘msPurity-vignette.Rmd’ using rmarkdown

Quitting from lines 107-110 [unnamed-chunk-2] (msPurity-vignette.Rmd)
Error: processing vignette 'msPurity-vignette.Rmd' failed with diagnostics:
no applicable method for `@` applied to an object of class "NULL"
--- failed re-building ‘msPurity-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’
  ‘msPurity-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted