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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data tidybulk
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* checking for file ‘tidybulk/DESCRIPTION’ ... OK
* preparing ‘tidybulk’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
* creating vignettes ... ERROR
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<p><a href="https://www.tidyverse.org/lifecycle/#maturing"><img src="https://img.shields.io/badge/lifecycle-maturing-blue.svg" alt="Lifecycle:maturing" /></a></p>
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[![Build Status](https://travis-ci.org/stemangiola/tidybulk.svg?branch=master)](https://travis-ci.org/stemangiola/tidybulk) [![Coverage Status](https://coveralls.io/repos/github/stemangiola/tidybulk/badge.svg?branch=master)](https://coveralls.io/github/stemangiola/tidybulk?branch=master)

-->
<p>In this article we show some examples of the differences in coding between tidybulk/tidyverse and base R. W [... truncated]
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<p><strong>Brings transcriptomics to the tidyverse</strong></p>
<div class="figure">
<img src="../man/figures/new_SE_usage-01.png" alt="plot of chunk unnamed-chunk-1" width="800px" />
<p class="caption">plot of chunk unnamed-chunk-1</p>
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<h2 id="functions-utilities-available">Functions/utilities available</h2>
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<th>Function</th>
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<td><code>identify_abundant</code></td>
<td>identify the abundant genes</td>
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<td><code>aggregate_duplicates</code></td>
<td>Aggregate abundance and annotation of duplicated transcripts in a robu [... truncated]
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Error: processing vignette 'manuscript_differential_transcript_abundance.Rmd' failed with diagnostics:
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--- finished re-building ‘manuscript_transcriptional_signatures.Rmd’

SUMMARY: processing the following file failed:
  ‘manuscript_differential_transcript_abundance.Rmd’

Error: Vignette re-building failed.
Execution halted