| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:11 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the LEA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LEA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1021/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| LEA 3.11.3 (landing page) Olivier Francois
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: LEA |
| Version: 3.11.3 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data LEA |
| StartedAt: 2023-02-06 09:52:01 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 09:52:03 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data LEA
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* checking for file ‘LEA/DESCRIPTION’ ... OK
* preparing ‘LEA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘LEA’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -c R_LFMM.c -o R_LFMM.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -c R_crossEntropy.c -o R_crossEntropy.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -c R_createDataSet.c -o R_createDataSet.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -c R_sNMF.c -o R_sNMF.o
In file included from sNMF/sNMF.h:13,
from R_sNMF.c:24:
sNMF/../bituint/bituint.h:212:2: error: #error Unsupported architecture
212 | #error Unsupported architecture
| ^~~~~
sNMF/../bituint/bituint.h:223:23: error: unknown type name ‘bituint’; did you mean ‘uint’?
223 | void init_mat_bituint(bituint ** dat, int N, int Mc, int *Mp);
| ^~~~~~~
| uint
In file included from R_sNMF.c:24:
sNMF/sNMF.h:62:9: error: unknown type name ‘bituint’
62 | bituint *X; /**< @brief the data matrix (of size nxMp) */
| ^~~~~~~
sNMF/sNMF.h:63:9: error: unknown type name ‘bituint’
63 | bituint *Xi; /**< @brief the init data matrix (of size nxMpi) */
| ^~~~~~~
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: R_sNMF.o] Error 1
ERROR: compilation failed for package ‘LEA’
* removing ‘/tmp/RtmpIAGSJY/Rinst1344e06d70f48a/LEA’
-----------------------------------
ERROR: package installation failed