| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:26 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SAIGEgds package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SAIGEgds.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1748/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SAIGEgds 1.13.1 (landing page) Xiuwen Zheng
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: SAIGEgds |
| Version: 1.13.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SAIGEgds |
| StartedAt: 2023-02-06 13:44:48 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 13:44:49 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SAIGEgds
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* checking for file ‘SAIGEgds/DESCRIPTION’ ... OK
* preparing ‘SAIGEgds’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘SAIGEgds’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c SPATest.cpp -o SPATest.o
SPATest.cpp:42:15: error: ‘COREARRAY_TARGET_CLONES’ does not name a type
42 | inline static COREARRAY_TARGET_CLONES
| ^~~~~~~~~~~~~~~~~~~~~~~
SPATest.cpp:56:15: error: ‘COREARRAY_TARGET_CLONES’ does not name a type
56 | inline static COREARRAY_TARGET_CLONES
| ^~~~~~~~~~~~~~~~~~~~~~~
SPATest.cpp:71:15: error: ‘COREARRAY_TARGET_CLONES’ does not name a type
71 | inline static COREARRAY_TARGET_CLONES
| ^~~~~~~~~~~~~~~~~~~~~~~
SPATest.cpp:93:9: error: expected initializer before ‘getroot_K1’
93 | getroot_K1(const double g_pos, const double g_neg,
| ^~~~~~~~~~
SPATest.cpp:140:9: error: expected initializer before ‘getroot_K1_fast’
140 | getroot_K1_fast(const double g_pos, const double g_neg, double &root,
| ^~~~~~~~~~~~~~~
SPATest.cpp:189:9: error: expected initializer before ‘get_saddle_prob’
189 | get_saddle_prob(double t, size_t n_g, const double mu[], const double g[],
| ^~~~~~~~~~~~~~~
SPATest.cpp:212:9: error: expected initializer before ‘get_saddle_prob_fast’
212 | get_saddle_prob_fast(double t, size_t n_nonzero, const double mu[],
| ^~~~~~~~~~~~~~~~~~~~
SPATest.cpp:238:9: error: expected initializer before ‘Saddle_Prob’
238 | Saddle_Prob(double q, double m1, double var1, size_t n_g, const double mu[],
| ^~~~~~~~~~~
SPATest.cpp:300:9: error: expected initializer before ‘Saddle_Prob_Fast’
300 | Saddle_Prob_Fast(double q, double m1, double var1, size_t n_g,
| ^~~~~~~~~~~~~~~~
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:198: SPATest.o] Error 1
ERROR: compilation failed for package ‘SAIGEgds’
* removing ‘/tmp/RtmpZy4XaH/Rinst1738e4dc3f495/SAIGEgds’
-----------------------------------
ERROR: package installation failed