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This page was generated on 2023-02-08 01:15:26 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
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To the developers/maintainers of the SAIGEgds package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SAIGEgds.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1748/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SAIGEgds 1.13.1 (landing page) Xiuwen Zheng
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
Package: SAIGEgds |
Version: 1.13.1 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SAIGEgds |
StartedAt: 2023-02-06 02:00:15 -0000 (Mon, 06 Feb 2023) |
EndedAt: 2023-02-06 02:00:16 -0000 (Mon, 06 Feb 2023) |
EllapsedTime: 1.2 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SAIGEgds ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘SAIGEgds’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c SPATest.cpp -o SPATest.o SPATest.cpp:42:15: error: ‘COREARRAY_TARGET_CLONES’ does not name a type 42 | inline static COREARRAY_TARGET_CLONES | ^~~~~~~~~~~~~~~~~~~~~~~ SPATest.cpp:56:15: error: ‘COREARRAY_TARGET_CLONES’ does not name a type 56 | inline static COREARRAY_TARGET_CLONES | ^~~~~~~~~~~~~~~~~~~~~~~ SPATest.cpp:71:15: error: ‘COREARRAY_TARGET_CLONES’ does not name a type 71 | inline static COREARRAY_TARGET_CLONES | ^~~~~~~~~~~~~~~~~~~~~~~ SPATest.cpp:93:9: error: expected initializer before ‘getroot_K1’ 93 | getroot_K1(const double g_pos, const double g_neg, | ^~~~~~~~~~ SPATest.cpp:140:9: error: expected initializer before ‘getroot_K1_fast’ 140 | getroot_K1_fast(const double g_pos, const double g_neg, double &root, | ^~~~~~~~~~~~~~~ SPATest.cpp:189:9: error: expected initializer before ‘get_saddle_prob’ 189 | get_saddle_prob(double t, size_t n_g, const double mu[], const double g[], | ^~~~~~~~~~~~~~~ SPATest.cpp:212:9: error: expected initializer before ‘get_saddle_prob_fast’ 212 | get_saddle_prob_fast(double t, size_t n_nonzero, const double mu[], | ^~~~~~~~~~~~~~~~~~~~ SPATest.cpp:238:9: error: expected initializer before ‘Saddle_Prob’ 238 | Saddle_Prob(double q, double m1, double var1, size_t n_g, const double mu[], | ^~~~~~~~~~~ SPATest.cpp:300:9: error: expected initializer before ‘Saddle_Prob_Fast’ 300 | Saddle_Prob_Fast(double q, double m1, double var1, size_t n_g, | ^~~~~~~~~~~~~~~~ make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:198: SPATest.o] Error 1 ERROR: compilation failed for package ‘SAIGEgds’ * removing ‘/home/biocbuild/bbs-3.17-bioc/R/library/SAIGEgds’